LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun3g01048	ATGGGGGGTGGTGGGAGAGGAGGCAGGTCTCGCACTCAACGAAAGCATTTCCGCCAGGGCAGAGAGAACGTGTGGAAGCGTTCCAAATCGGATCCTGATCCTTCTTCAACAGAAAACAATCCTTCGTGGACTCCTTTCGCCACCGAGAACGCCGCTTTCGATTTCTACTACAAAGAGCAGGGAATAGTCGATTCTCAACAATGGGACCAATTCGTTGCTGTTCTCCGAACTCCATTGCCCGCAACCTTCAGAATCAACTCTAGTAGCCAGTTTTCCGACGACATTCGTTCTCAGTTGGAAAATGATTTCGTGCATTCACTTCGCGATGAGGTTGGTGAAGGGGGTGAGACTGAGGCTATTCGGCCGTTGCTGTGGTACCCTGGGAATTTTGCTTGGCATTCAAATTTTTCTAGGATGCAGCTTAGGAAGAATCAAACGCTCGAGAGGTTCCATGAATTTTTAAAGCTAGAAAACGAGATTGGAAATATCACAAGACAGGAAGCTGTCAGTATGGTTCCTCCTCTCTTCTTGGATGTGCATTCAGATCATTTTGTGCTTGATATGTGTGCTGCACCAGGTTCAAAAACATTTCAATTGCTTGAGATTATACACGAATCAAGTAAATCGGGATCACTGCCTGATGGAATGGTTATAGCAAATGATCTTGATGTCCAAAGATGCAATCTTCTCATCCACCAAACAAAAAGAATGTGCACAGCCAATCTAATTGTTACAAATCATGAAGCACAAAACTTCCCAGGATGCCGATTAAACAGAAATTATGAAAGGATGGAGTTAGATCACAGTATTGGCCAACTATTATTTGATCGTGTTCTTTGTGATGTCCCATGCAGTGGAGATGGTACCCTTCGCAAGGCACCTGATCTCTGGAGAAAATGGAACACAGGGATGGGACATGGCCTTCACAGCCTACAAGTTTTAATTGCTATGCGAGGTATATCTTTACTCAAAATTGGTGGAAGAATGGTTTATTCAACCTGCTCAATGAATCCTATTGAGAATGAAGCTGTGGTTGCTGAGGTTTTGCGAAGGTGTGGAGGTTCTGTTAAACTTGTTGATGTCTCTAGTGAGCTTCCACAACTTATTCGTCGGCCAGGTCTCAAGAGATGGAAGGTATATGACAAGGGCTCCTGGTTTGTCTCTTATAATGATGTTCCAAAGTATCGTAGAAGTGTAATTCTTTCCAGTATGTTTCCTTCTGGAAGAGGACATCCCGATGTTGTTGATAGTAGTTGTAATGTTAACGTAGAGGTTGGTACTAATGGTATTCATGAAAACGCTGGAGATATTAATGAAAGCGCTGGAGATAGTGTTCAACCAGTACTGAATCCTGTGATGTCTGAATCTGCCGAGGAAGTTTCTGATTTCCCTCTAGAGCATTGTATGAGGATAGTGCCTCATGATCAGAATACTGGAGCCTTCTTCATTGCTGTTCTGCAAAAAGTTTCTCCTTTGCCAGTAATTCCAGAAAAACCAAAAGTAAAAATTAATGATCAATGTGTAGATCCAGCAAACCAGAGTCTTAATGATGCGCAAGTACAACAGATCACTTCACCGGAAAATGCACATGAAGAAGACTTCAAAGCAGTTTTAGAGGAAAATGTAGATGACAATGAACCCAATACTGAAGATATGGAAGATGATCCTGTTGCATGTGAAGAACAGAAAAGTAAGGAAACTGTAGTGCCTGATAATGTACAAAACACGATGAAGAGGATTCCAGGCAAGAGAAAGCTACAAATTCAAGGAAAATGGAGGGGTGTTGACCCTGTTGTCTTTTTCAAAGATGAAACAATAATTAATAGTATAAGGGATTTTTATGGAATTGACGAGCGTTTTGCATTTGATGGTCACCTTGTTACAAGAAATAGTGATACAAATCATGTGAAAAGAATTTATTATATCTCGAAGTCAGTCAAAGATGTTCTTGAGTTGAACTTCAAAGTAGGGCAGCAACTTAAAATAACCTCAATTGGCCTGAAGATGTTTGAAAGACAAACAGCACGTGAAGGTAGCTCTGCACCATGTTCTTTCCGCATATCGTCTGAAGGATTGCCCCTTATTCTCCCATACATAACCAAACAGATTCTGCATGCATCTCCCGCAGACTTCAAGCATCTTCTGCAGAACAAAGAAGTAAAATTTGAAGATTTTACTGATGCCAAGTTTGGTGAGAAGGCGGCAAACCTATTGCCCGGTTGTTGTGTGGTAATTCTGAGTGTAGGAAACACAACTTCCGTAGAGTCTCTCCAAGTGGATGAGTCAACGATAGCCATTGGATGCTGGAAAGGAAGAGCGAGGTTGTCTGTGATGGTTACTGCAATGGATTGCCAAGAACTACTTGAAAGGCTTTTAATACGTTTTGACAACGTAAATGGTTCCTCTGGGCATGACGACAAATCCTCTAATACTGAGGAAGAAATACGACCTGTGCAAGAGTAA	2463	0.4186	MGGGGRGGRSRTQRKHFRQGRENVWKRSKSDPDPSSTENNPSWTPFATENAAFDFYYKEQGIVDSQQWDQFVAVLRTPLPATFRINSSSQFSDDIRSQLENDFVHSLRDEVGEGGETEAIRPLLWYPGNFAWHSNFSRMQLRKNQTLERFHEFLKLENEIGNITRQEAVSMVPPLFLDVHSDHFVLDMCAAPGSKTFQLLEIIHESSKSGSLPDGMVIANDLDVQRCNLLIHQTKRMCTANLIVTNHEAQNFPGCRLNRNYERMELDHSIGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGMGHGLHSLQVLIAMRGISLLKIGGRMVYSTCSMNPIENEAVVAEVLRRCGGSVKLVDVSSELPQLIRRPGLKRWKVYDKGSWFVSYNDVPKYRRSVILSSMFPSGRGHPDVVDSSCNVNVEVGTNGIHENAGDINESAGDSVQPVLNPVMSESAEEVSDFPLEHCMRIVPHDQNTGAFFIAVLQKVSPLPVIPEKPKVKINDQCVDPANQSLNDAQVQQITSPENAHEEDFKAVLEENVDDNEPNTEDMEDDPVACEEQKSKETVVPDNVQNTMKRIPGKRKLQIQGKWRGVDPVVFFKDETIINSIRDFYGIDERFAFDGHLVTRNSDTNHVKRIYYISKSVKDVLELNFKVGQQLKITSIGLKMFERQTAREGSSAPCSFRISSEGLPLILPYITKQILHASPADFKHLLQNKEVKFEDFTDAKFGEKAANLLPGCCVVILSVGNTTSVESLQVDESTIAIGCWKGRARLSVMVTAMDCQELLERLLIRFDNVNGSSGHDDKSSNTEEEIRPVQE	820

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun3g01048	820	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	12	802	IPR023267	GO:0001510
	Viun3g01048	820	MobiDBLite	consensus disorder prediction	17	33	-	-
	Viun3g01048	820	MobiDBLite	consensus disorder prediction	801	820	-	-
	Viun3g01048	820	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	71	489	IPR001678	GO:0008168
	Viun3g01048	820	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	54	489	IPR029063	-
	Viun3g01048	820	ProSitePatterns	NOL1/NOP2/sun family signature.	275	286	IPR018314	GO:0003723\|GO:0008168
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	471	488	IPR023267	GO:0001510
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	276	288	IPR023267	GO:0001510
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	326	342	IPR023267	GO:0001510
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase signature	186	196	IPR023267	GO:0001510
	Viun3g01048	820	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	48	390	-	-
	Viun3g01048	820	MobiDBLite	consensus disorder prediction	806	820	-	-
	Viun3g01048	820	MobiDBLite	consensus disorder prediction	1	45	-	-
	Viun3g01048	820	Gene3D	Vaccinia Virus protein VP39	50	389	IPR029063	-
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	132	153	IPR023270	GO:0016428
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	660	672	IPR023270	GO:0016428
	Viun3g01048	820	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	360	379	IPR023270	GO:0016428
	Viun3g01048	820	Pfam	16S rRNA methyltransferase RsmB/F	176	359	IPR001678	GO:0008168

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun3g01048	Viun-Chr3	6459777	6467708	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun3g01048	K15334		-	gmx:100808859	1456.81

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g01048	3	6459777	6467708	Viun3g01048	3	6459777	6467708	ECH
	Viun3g01048	3	6459777	6467708	Viun1g03349	1	40919188	40925659	PCT