LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun1g03349	ATGGGGAGAGGAAAGGGAGGGAAGAAGAGTCGCACTCAAAGAAAGCATTTCCAAGAGAGCAGAGAAAATGTGTGGAACTCCAAACGTCCTAGATCAGATTCAGATCCTTTTCCTTTCTCCGACCGCTTCGCTACTCAGAACCTCGCTTTCGATCACTATTACAAGGAGCAGGGAATCGTGTCATCGCAAGAATGGGATGAATTCGAGCAACTTCTCCGAACTCCTTTGCCTGCAGCATTCAGGATCAATTCCACTAGCCGGTTTTGCGCGGATATTCGGTCCCAACTAGAGAATGATTTTGTGCACTCTCTTCAGGCTGAGGTTGTGGAAGGGGATGATACAGAGGCTATTTTACCTTTGCCATGGTATCCTGATAATCTTGCTTGGCATTCGAATTTTTCGCGTAAGCAGCTCAGGAAAAACCAAACACTCGGGAGGTTTCATGAATTCTTAAAGATAGAAAATGAAATTGGAAATATTACAAGACAGGAAGCTGTCAGCATGGTACCTCCCCTGTTTTTGGATGTACATTCAAATCATTTTGTACTTGATATGTGTGCAGCACCAGGTTCAAAAACATTTCAATTGCTTGAGATTTTACACCATTCAACTAAAGTAGGATCTCTGCCCGATGGAATGGTTATAGCAAATGATCTAGATATCCAAAGATGTAATCTTCTCATTCACCAAACCAAACGGATGTGCACAGCTAACCTGATTGTCACCAATCATGAAGCTCAACACTTCCCAGGATGTCTCTTAGAAAAACATTATGATAAAATGGAGCTAGATCAAGAAGGCCAGTTATTATTTGATCGGGTTCTGTGTGATGTCCCATGCAGTGGAGATGGTACCCTACGTAAGGCCCCTGATCTCTGGAGGAAATGGAACACAGGGACTGGAAATGGCCTTCATAACCTACAAGTTCTAATTGCAATGCGAGGTGTATCTTTACTTAAAGTTGGTGGAAGGATGATTTATTCAACCTGCTCAATGAATCCTATCGAGAATGAAGCGGTTGTGGCAGAGGTTTTGCGAAGGTGTGGAGGGTCCATCGAACTTGTAGATGTCTCTAGTGAACTTTCCCAACTCACTCGTCGACCAGGTCTCAAGAGATGGAAGGTATGTGACAGAGGCAAGTGGTTCATCTCCAGCAAAGACGTTCCCAAGCTTCGTAGAAATGTAGTTCTTCCCAGCATGTTTCCAAATGGCGGAAGCTATCAGGATGTTGGTGATAGTAATTCTAATGTCATCATTGAAGGTGATATTAATACTGATGATGTTAAGGGACATAGTGAAGATGATATCCAAGCAATGGAGAACCCTGCTATGCTCGAATTTACTGAGGAAGATTCTGATTTCCCACTAGAGCGGTGCATGAGGTTTGTGCCTCATGATCAGAACACTGGGGCCTTCTTTATTGCTGTTCTGCAGAAAGTTTCTGCTCTTCCTGCAATCCAGGTAAAACCTAGAAAAGAAGTTGGGAAACAGGTTGACACAGCAAACCAGGGCAATGAGGATTCACACGAACTGCATGTTAATCCATTGGAAAGTATACCTGAAGGAATTTCAGAGGCTAATATAGATGAAAATGAACCTAATGAAACAGATTTGAAGGTTAATTCTGTTGCATGTGAAGAAGCGGATTTCAAGGAAGCCCAAGAACCCTGCAGTGTAGAAATCATAACAAAGAATACTCCAGGCAAAAGGAAGCTACAGTTTCAAGGAAAATGGAGAGGCATTGATCCTGTTGTCTTCTTCAAAGATGAAGGAGTTATTGACAGCATAAAGGCATTTTATGGCATTGATGATCAATTTCCATTTAATGGTCACCTTGTAACAAGAAACAGTGATACAAGTCACGTGAAAAGAATTTACTATATATCCAAGTCAGTCAAAGATGTTCTGGAGTTGAACTTCTCAGTGGGGCAGCAACTTAAAATAACTTCTGTTGGCCTGAAGGTTTTTGAAAGACAAACTTCATGTGAAGGAAGGTCTGCACAATGTTCTTTCCGGATCACTTCTGAAGGATTGCCCCTTATTCTCCCTCACATCTCCAAACAGATTCTATGTGCATCTGCGATAGATTTCAAGCATCTTCTGCAGTATAGAGCTGTAAAATTTGCAGATTTTGTGGATGCCAAGTTCGGAGAAAATGCTGCAAACCTAATGCCGGGCTGTTGCGTGATAGTTCTGGGTGAAGGAAGCAGAGCTGGTACAGGGACCCTCCAAGTGGACGAGTCTACTGTAGCCATTGGATGCTGGAAGGGTAGAGCAAGTTTGACTGTGATGGTTGGTGCATTGGAATGCCAAGAACTGCTCCAAAGGCTTTTAATGCGTCTAGATACACAAACAGAAAAGGACTCCTCCATGCATGAGGACCAACCGTCTGGTACCAAGGGAGATGAAGCACAAGTGGAAAACGGTAAAATTGAAGACGTGGGAGTTACTGGGTGTTAG	2460	0.4297	MGRGKGGKKSRTQRKHFQESRENVWNSKRPRSDSDPFPFSDRFATQNLAFDHYYKEQGIVSSQEWDEFEQLLRTPLPAAFRINSTSRFCADIRSQLENDFVHSLQAEVVEGDDTEAILPLPWYPDNLAWHSNFSRKQLRKNQTLGRFHEFLKIENEIGNITRQEAVSMVPPLFLDVHSNHFVLDMCAAPGSKTFQLLEILHHSTKVGSLPDGMVIANDLDIQRCNLLIHQTKRMCTANLIVTNHEAQHFPGCLLEKHYDKMELDQEGQLLFDRVLCDVPCSGDGTLRKAPDLWRKWNTGTGNGLHNLQVLIAMRGVSLLKVGGRMIYSTCSMNPIENEAVVAEVLRRCGGSIELVDVSSELSQLTRRPGLKRWKVCDRGKWFISSKDVPKLRRNVVLPSMFPNGGSYQDVGDSNSNVIIEGDINTDDVKGHSEDDIQAMENPAMLEFTEEDSDFPLERCMRFVPHDQNTGAFFIAVLQKVSALPAIQVKPRKEVGKQVDTANQGNEDSHELHVNPLESIPEGISEANIDENEPNETDLKVNSVACEEADFKEAQEPCSVEIITKNTPGKRKLQFQGKWRGIDPVVFFKDEGVIDSIKAFYGIDDQFPFNGHLVTRNSDTSHVKRIYYISKSVKDVLELNFSVGQQLKITSVGLKVFERQTSCEGRSAQCSFRITSEGLPLILPHISKQILCASAIDFKHLLQYRAVKFADFVDAKFGENAANLMPGCCVIVLGEGSRAGTGTLQVDESTVAIGCWKGRASLTVMVGALECQELLQRLLMRLDTQTEKDSSMHEDQPSGTKGDEAQVENGKIEDVGVTGC	819

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun1g03349	819	ProSitePatterns	NOL1/NOP2/sun family signature.	271	282	IPR018314	GO:0003723\|GO:0008168
	Viun1g03349	819	MobiDBLite	consensus disorder prediction	13	29	-	-
	Viun1g03349	819	ProSiteProfiles	SAM-dependent MTase RsmB/NOP-type domain profile.	68	480	IPR001678	GO:0008168
	Viun1g03349	819	FunFam	S-adenosyl-L-methionine-dependent methyltransferase superfamily protein	45	386	-	-
	Viun1g03349	819	Pfam	16S rRNA methyltransferase RsmB/F	173	348	IPR001678	GO:0008168
	Viun1g03349	819	PANTHER	NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING	13	790	IPR023267	GO:0001510
	Viun1g03349	819	MobiDBLite	consensus disorder prediction	1	38	-	-
	Viun1g03349	819	SUPERFAMILY	S-adenosyl-L-methionine-dependent methyltransferases	39	480	IPR029063	-
	Viun1g03349	819	Gene3D	Vaccinia Virus protein VP39	45	388	IPR029063	-
	Viun1g03349	819	MobiDBLite	consensus disorder prediction	785	819	-	-
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	356	375	IPR023270	GO:0016428
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	646	658	IPR023270	GO:0016428
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase NCL1 subfamily signature	129	150	IPR023270	GO:0016428
	Viun1g03349	819	MobiDBLite	consensus disorder prediction	785	809	-	-
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase signature	183	193	IPR023267	GO:0001510
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase signature	462	479	IPR023267	GO:0001510
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase signature	272	284	IPR023267	GO:0001510
	Viun1g03349	819	PRINTS	RNA (C5-cytosine) methyltransferase signature	322	338	IPR023267	GO:0001510

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun1g03349	Viun-Chr1	40919188	40925659	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun1g03349	K15334		-	gmx:100808598	1385.55

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun3g01048	3	6459777	6467708	Viun1g03349	1	40919188	40925659	PCT