Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00865 ATGGCTACTTCCCCACGTGGTCTTGAAGGTAGACACCGTTTTCCAGCATCCATTGTAGATTTATACAAACGAAGATTAACAAAAGACAATGCTAAAAATGTCGAGAAAGAGAAGCCTATCCAGTTATCCATCAGAGACAGAAACTCAAGATGCAACTTTTCTTTCTTGAAAACTTCTCTCCTATTCATAACCATCTGCATTACTTGTGTAATGCTTCTTTATTCCACAAAACTTTACAACGGAAACCATTTATGGGGTGGATCAGATCCTCGATATACATCGGATGTAGACATTAACTGGGATGATATGTTACAAATTACAGAGAAACTGACAGGGAAAAAAGAATTTCAAGGAGTTGGGCTTCTAAACTTCAATAAGACTGAATTAGAGCATTGGAAACAGCTTATTCCTAATGTTACACATGTTGTCCTGAACTTAGAGTATGCTGCAGAAAACGTGACATGGGAATCCCTATACCCAGAATGGATTGATGAAGAAGAAGGGACCCAAGTTCCGATTTGTCCTTCCCTTCCAAGTCTTAGATCTCCTGGAATAAGGCTCAATCTCATAGCTCTGAAGCTTCCTTGTGTCAATGGAGGGAATTGGTCTAGAGATGTTGCTCGCTTGCACTTGCAACTAGCAGCAGCTAGGCTTGCAACCTCTTTCAAAAGCAATTATCCCGTTTATGTGCTTTTTGTTTCCAAATTCTTCCCAATACCAAATTTGTTTACCTGCAAAGAACTTGCCAGACATGAAGGGAATCTATGGTTGTACAGACCAAACCTGACTGTTTTGAGACAAAGACTCCTCCTCCCAGTAGGATCATGTGAACTTTCACTTCCTTTGAGGGACAAAGAGGTGATTTACGCGGGAAATGCTCGAACAGAAGCGTATGTAACTATTCTCCATTCAGCTCACGTTTATGTGTGTGGAGCTATTGCTGCTGCACAAAGCATTCGCATGTCTGGATCAACTCGGGACCTGGTTATACTTGTTGATGAGACATTGGGTGAGTACCACAGAAGTGGTTTAGAAGCAGCAGGGTGGAAGATTAGGAGAATACAAAGGATCAGAAACCCAAAGGCTGAAAAAGATGCTTACAACGAATGGAACTACAGCAAGTTTCGTTTGTGGCAGCTTACAGATTACGACAAGATAATATTCATCGATGCAGATTTGGTCATTCTAAGAAACATAGATTTCCTATTTGGAATGCCAGAAATCACTGCAACAGGAAATGATGGCACAGTTTTTAACTCGGGTGTGATGGTGGTTGAGCCATCAAATTGCACATTCAAGCTTCTGATGGATCATATTGATGAGTTTGAGTCCTACAACGGAGGGGACCAGGGATACTTAAATGAAATATTTACATGGTGGCACAGGATACCGAAGCACATGAACTTTTTGAAGCATTTTTGGGTTGGAGATGAGGAAGAGAAGAAGCAAATGAAGACTTTGTTGTTTGGTGCTGAGCCTCCAGTTTTATATGTGCTTCACTATCTAGGAATGAAGCCGTGGTTGTGCTTTCGGGACTACGATTGTAACTGGAATGCTGATATCTTTCACGAGTTTGCGAGTGATGTTGCTCATGAAAGGTGGTGGAAGGTGCATGATGAAATGCCTAAGCTTTTGCAGCAGTTTTGCATGTTGAAGTCAAAGCAGAAGGCCCAGTTGGAATGGGATCGTAGGCAAGCTCAAATTGCAAACTTCTCAGATGGGCATTGGCGAATCAGGGTTAAAGATAAGAGGTTGAAGAAATGCATAGATAAGTTGTGTTCATGGAAAAACATGTTGAAGCATTGGGGTGAAACCAATTGGACCGGTGATGATTCTTGTTATACTCCAACGCCACCTGCCATTGCCACAACATCACTTTCTGATCTGTGA 1890 0.4164 MATSPRGLEGRHRFPASIVDLYKRRLTKDNAKNVEKEKPIQLSIRDRNSRCNFSFLKTSLLFITICITCVMLLYSTKLYNGNHLWGGSDPRYTSDVDINWDDMLQITEKLTGKKEFQGVGLLNFNKTELEHWKQLIPNVTHVVLNLEYAAENVTWESLYPEWIDEEEGTQVPICPSLPSLRSPGIRLNLIALKLPCVNGGNWSRDVARLHLQLAAARLATSFKSNYPVYVLFVSKFFPIPNLFTCKELARHEGNLWLYRPNLTVLRQRLLLPVGSCELSLPLRDKEVIYAGNARTEAYVTILHSAHVYVCGAIAAAQSIRMSGSTRDLVILVDETLGEYHRSGLEAAGWKIRRIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDADLVILRNIDFLFGMPEITATGNDGTVFNSGVMVVEPSNCTFKLLMDHIDEFESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWVGDEEEKKQMKTLLFGAEPPVLYVLHYLGMKPWLCFRDYDCNWNADIFHEFASDVAHERWWKVHDEMPKLLQQFCMLKSKQKAQLEWDRRQAQIANFSDGHWRIRVKDKRLKKCIDKLCSWKNMLKHWGETNWTGDDSCYTPTPPAIATTSLSDL 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00865 629 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 293 544 IPR029044 -
Viun3g00865 629 PANTHER GLYCOGENIN SUBFAMILY MEMBER 202 588 - -
Viun3g00865 629 Pfam Glycosyl transferase family 8 301 508 IPR002495 GO:0016757
Viun3g00865 629 FunFam Hexosyltransferase 293 545 - -
Viun3g00865 629 SUPERFAMILY Nucleotide-diphospho-sugar transferases 296 542 IPR029044 -
Viun3g00865 629 CDD GT8_Glycogenin 296 541 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00865 Viun-Chr3 5336887 5340627 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00865 7 629 Glycosyltransferase AT3G18660 63.438 0.0 825
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00865 K20890 - gmx:100783884 1119.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00865 3 5336887 5340627 Viun3g00865 3 5336887 5340627 ECH
Viun9g01813 9 27701536 27706389 Viun3g00865 3 5336887 5340627 ECH
Viun3g00865 3 5336887 5340627 Viun9g01813 9 27701536 27706389 PCT