Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00702 ATGGAAGCAATGAACGTGATGAGGGTTAGAGAAGACGTGCGTGTGGAAGACGATACCACTCAGACTGAACTCACCAAAATTCGTCTCTTGAGGGCAATGGTTGAAGCACGAGATCCCTCTGCTAAGGAAGAAGATGATTTTACGATTAGAAGATTCCTACGTGCTCGTGATTTAGATTTGGAGAAGGCTTCTACAATGTTCCTGAAGTACTTGAAATGGAGACATTCCTTTGTTCCAAATGGTTCTGTAACTGTATCAGAAGTTCGCAATGATCTTGCTCAGGAGAAGGTGTTCATGCAAGGACATGACAAGATAGGTCGACCCATAGCTGTTGTAGTCGGTAGAAAACATTTTCAGAACAAAGATGGTGGAGATGAATTCAAACGTTTTGTCGTCTACGTGTTTGACAAAATATGCGCAAGTATTCCACCTGGTCAAGAAAAGTTTGTTGCCATAGCTGAACTCAAGGGATGGGGATACTCAAACAGTGACGTTCGTGGATACCTTGGTGCTCTAACAGTTTTGCAGGATTATTACCCGGAAAGATTGGGGAAGTTGATTATTGTCAATGCACCATACATATTTATGAAAGTGTGGCAACTCATTTACCCTTTCATTGACAACAAAACCAAGAAGAAGATAGTGTTTGTGGATAAAAATAAGGTTAAATCTGCACTGTTAGAAGACATTGATGAAAGTAATATGCCAGAGATATTCGGTGGGCCACTACCATTAGTCCGAATTCAGGATATCTAA 756 0.4087 MEAMNVMRVREDVRVEDDTTQTELTKIRLLRAMVEARDPSAKEEDDFTIRRFLRARDLDLEKASTMFLKYLKWRHSFVPNGSVTVSEVRNDLAQEKVFMQGHDKIGRPIAVVVGRKHFQNKDGGDEFKRFVVYVFDKICASIPPGQEKFVAIAELKGWGYSNSDVRGYLGALTVLQDYYPERLGKLIIVNAPYIFMKVWQLIYPFIDNKTKKKIVFVDKNKVKSALLEDIDESNMPEIFGGPLPLVRIQDI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00702 251 Pfam CRAL/TRIO domain 95 241 IPR001251 -
Viun3g00702 251 PANTHER OS03G0850700 PROTEIN 16 250 - -
Viun3g00702 251 Gene3D - 15 248 IPR036865 -
Viun3g00702 251 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 85 247 IPR001251 -
Viun3g00702 251 CDD SEC14 97 241 IPR001251 -
Viun3g00702 251 SMART sec14_4 91 244 IPR001251 -
Viun3g00702 251 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Viun3g00702 251 SUPERFAMILY CRAL/TRIO domain 87 244 IPR036865 -
Viun3g00702 251 SUPERFAMILY CRAL/TRIO N-terminal domain 17 80 IPR036273 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00702 Viun-Chr3 4358932 4371929 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00702 51 237 Acyl Lipid Metabolism Gene Families AT1G55840 29.048 7.40e-13 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00702 - - gmx:548015 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00702 3 4358932 4371929 Viun3g00702 3 4358932 4371929 ECH
Viun3g00702 3 4358932 4371929 Viun9g01599 9 23795691 23798222 PCT