Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00585 ATGGCCGTCGTTTCGCGAACTACCGCCACCTACTCGCACAGCCACTTACCCCGACGCCACTTCGATAGGGAGACCAGAGCCTCTGTTTCTAACACTTTCTCATGCTCTACCTGGGATTCTGCTAAGAAGCCTTCTCCGACGCAGAGAATTGTCACACGTGGGGGGAGAGTGATTGTTGCTGCTAGCCCTCCCACTGAAGACGCTGTGGTTGCCACGGACCCACTCACCAAGCAGGATCTTGTGGATTATCTTGCCTCGGGTTGCAAGCCCCGGGAAAAATGGAGAATAGGTACTGAACACGAGAAGTTTGGTTTTGAGTTTGGAAGCTTGCGTCCTATGAAGTATGAGCAAATAGCAGAATTGTTGAATGGAATTGCCGAGAGATTTGACTGGGATAAAATAATGGAAGGTGATAAAATTATTGGACTCAAACAGGGGAAGCAGAGCATATCATTGGAGCCCGGTGGTCAGTTTGAACTTAGTGGAGCCCCTCTTGAAACCTTGCACCAGACTTGTGCTGAAGTTAATTCACACCTTTATCAGGTTAAAGCTGTAGCCGAGGAAATGGGAATTGGATTTTTGGGAATTGGTTTCCAGCCAAAGTGGGAAATCAAAGACATACCTGTAATGCCAAAGGGAAGATATGATATTATGAGGAATTACATGCCTAAAGTTGGTTCTCTGGGGCTTGACATGATGTTCAGGACATGCACTGTACAGGTCAATCTGGACTTTAGTTCAGAAGCAGATATGATCAGGAAATTTCGTGCTGGCCTTGCTCTACAGCCTATAGCAACGGCTCTTTTTGCAAATTCACCTTTTAAAGAGGGAAAGCCAAATGGTTTTGTAAGTATGAGAAGCCATATTTGGACCGATACTGATAAGGACCGCACAGGCATGCTGCCTTTTGTTTTTGATGATTCTTTTGGGTTTGAGCAGTATGTTGATTATGCTCTTGATGTTCCTATGTATTTTGTCTACCGGAAACATAGATATATTGATTGTACTGGAAAGACCTTCAGGGACTTCTTGGCTGGAAGACTTCCTTGTATTCCTGGTGAATTACCAACTCTCAATGATTGGGAAAATCACTTGACAACTATATTTCCTGAGGTCAGGCTGAAGAGATATTTGGAGATGAGAGGTGCTGATGGAGGGCCATGGAGAAGGTTATGTGCATTACCAGCACTTTGGGTAGGGTTATTGTACGATGATGCTTCTTTACAAAGTGTTTTGGATTTGACAGCTGATTGGACCCCAGAAGAAAGACAGATGTTAAGGAATAAGGTTCCCATAACTGGTCTAAAAACACCATTCCGAGATGGTTTGCTGAAGCATGTTGCTGAAGATGTTCTTAAGTTGGCAAAGGATGGCTTGGAGAGAAGAGGCTTCAAGGAATCGGGATTTTTGAATGAGGTTGCCGAGGTGGTTAGAACAGGGGTCACTCCAGCTGAGAGGCTTTTGGATTTGTATCATGGAAAGTGGGAGCAATCCGTAGATCATGTGTTTGAGGAATTACTTTATTAA 1527 0.444 MAVVSRTTATYSHSHLPRRHFDRETRASVSNTFSCSTWDSAKKPSPTQRIVTRGGRVIVAASPPTEDAVVATDPLTKQDLVDYLASGCKPREKWRIGTEHEKFGFEFGSLRPMKYEQIAELLNGIAERFDWDKIMEGDKIIGLKQGKQSISLEPGGQFELSGAPLETLHQTCAEVNSHLYQVKAVAEEMGIGFLGIGFQPKWEIKDIPVMPKGRYDIMRNYMPKVGSLGLDMMFRTCTVQVNLDFSSEADMIRKFRAGLALQPIATALFANSPFKEGKPNGFVSMRSHIWTDTDKDRTGMLPFVFDDSFGFEQYVDYALDVPMYFVYRKHRYIDCTGKTFRDFLAGRLPCIPGELPTLNDWENHLTTIFPEVRLKRYLEMRGADGGPWRRLCALPALWVGLLYDDASLQSVLDLTADWTPEERQMLRNKVPITGLKTPFRDGLLKHVAEDVLKLAKDGLERRGFKESGFLNEVAEVVRTGVTPAERLLDLYHGKWEQSVDHVFEELLY 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00585 508 SUPERFAMILY Glutamine synthetase/guanido kinase 86 506 IPR014746 GO:0003824
Viun3g00585 508 NCBIfam glutamate--cysteine ligase 74 508 IPR011556 GO:0004357|GO:0006750
Viun3g00585 508 Gene3D - 60 508 - -
Viun3g00585 508 PIRSF GCL 61 508 IPR035434 GO:0004357|GO:0006750
Viun3g00585 508 PANTHER GLUTAMATE--CYSTEINE LIGASE, CHLOROPLASTIC 49 508 IPR035434 GO:0004357|GO:0006750
Viun3g00585 508 FunFam Glutamate--cysteine ligase 60 508 - -
Viun3g00585 508 Pfam Glutamate-cysteine ligase family 2(GCS2) 126 414 IPR006336 GO:0004357|GO:0042398
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00585 Viun-Chr3 3615473 3622940 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00585 K01919 - gmx:547545 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00585 3 3615473 3622940 Viun3g00585 3 3615473 3622940 ECH
Viun2g02582 2 31825287 31828994 Viun3g00585 3 3615473 3622940 PCT