Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00583 ATGGGAAACCGACGCTTCACTCAGGTCGCAACCAGCGACGAGGAGGACGAAACTCCTCCGCCTCCGAAGCAGCAATCCACGGCCAGTGCCTCCGACGAGAACCGGTCGAAGCAGCAGCGCAAGAGGAAGAGGATGAAGCTCCAGGAAGAAGAGGAGGAAGAGGAGGAAGTGGAGAAGGAGAGCGAAAAGGAGAAAGAGAAAGAGAAAGAGGAAGATAAGAACAAGAAGAGAAAGATCAGAGACAAGCAGGACGGAAGATCTAACGAAGAAGAGGAACCGCCGCAGGAAGACGCCAAACCCATCGGCGAACCGATTAGGGTTTCTGGAAAGGGGAGAGGCCGGAAAAAACATTTTGATTCCTTTGAGTACGACGGAAACCAATACACGCTGGAAGATCCTATACTTCTCACACCTGAAGACAAAGACCAAAAGCCTTATGTGGCGATTATTAAGGACATTACGCAATCCATAAATGGCAGCATGATGGTCACAGGCCAGTGGTTCTATCGACCTGAAGAAGCTGAAAGGAAAGGTGGTGGCAGCTGGCAATCACGTGATACAAGGGAGCTGTTTTATAGTTTCCACCGTGATGATGTACCTGCAGAATCTGTTATGCATAAGTGTGTGGTGCATTTTGTTCCCATACACAAACAGCTTCCAATTCGTAAGCTCCATCCTGGGTTTATTGTGCAAAAAGTGTATGATACAGTAGAAAGGAAACTTTGGAAGCTAACTGATAAGGACTATGAGGACAATAAACAGCAAGAAATTGATGAACTTGTTCAGAAAACTCTTCAACGTTTGGGTGAACTACAAGATATTGAGCCTGAAGAACCCGTTGCTGAACAGGAAGATCTGATGAAAAATAAAAGAATCTTGAGGAAAAAGAGCATTTCACCTCTCGATGTTTCAAAAGAGGAGGAAACATCTCGTAAGAGTGACCAATCTCTGAAACCTGAAACACCCGGGAGTTGTGCAACTAATGCTTCAGAACATTATCGTATACTAGTGGATTTTAATGCTCTAACTGGAGATACCCATCGTGACAAATGTTTGGAGAAGTTGCTTCAAAGTGTTCAATTCATATTTAACTCTGATGACAGCACAAAGAAGGAAGACAAAGTAAATGACAATTCTGATGCAGTCAACAATGGAAACAATGACAAAAGTTCAGAAGTAGCAAATGAATGTAAAGACAAGGCTCAACAGAGTTCCAAGTCTTTTATCTGGCCAGATGTTGCTGTTCCAGCTGTAGTTGCTCTAGAAAAAGCATCACATGAAACCTTTTCATCAGATTATCAGAAGTATAATCAAAAGCTACGGCAATTAGTATTTAATCTCAAGAACAATGCAATCCTAGCACGCCGTCTATTAAATGGAGAGTTGGAACCTTCTAAAATATTGAATATGACTCCCAATGAATTGAAGGAGGGTTTGACTGCTGAGGAAACAAACAAGAAAGAGCCTGATGAGTCACAACAAATGCAGATGACGGGTGCTCGATGCCGTAGATGCAGTGAGTGTAAGGTGGGCTTGAGGGATATAATCCACGCAGGCCATGGTGATCGATATCAGCTGGAATGTATTGCCTGTGGTCATTCCTGGTTTGCCTCCCGTGATGAAGTGTCTGACCTGACTATAGATGCATCAGATTCAAAAAGAAGTGTAGGTACAGCGCCATGGGCCACTGCAAAATTTGAAGATGTTGAAAAGAAACTGGTCAGTCCCCGTGAATCTGAAAAGAATGACATATTTAAGAAAACAAGTGAAGCATATATGCCAGTTTTGGATGCCCAGAAATCGTTTGGCAAGTCTAGGAAAGATGAAAACGTCCAAGCTTCAAAACAGGTTGATTAG 1857 0.433 MGNRRFTQVATSDEEDETPPPPKQQSTASASDENRSKQQRKRKRMKLQEEEEEEEEVEKESEKEKEKEKEEDKNKKRKIRDKQDGRSNEEEEPPQEDAKPIGEPIRVSGKGRGRKKHFDSFEYDGNQYTLEDPILLTPEDKDQKPYVAIIKDITQSINGSMMVTGQWFYRPEEAERKGGGSWQSRDTRELFYSFHRDDVPAESVMHKCVVHFVPIHKQLPIRKLHPGFIVQKVYDTVERKLWKLTDKDYEDNKQQEIDELVQKTLQRLGELQDIEPEEPVAEQEDLMKNKRILRKKSISPLDVSKEEETSRKSDQSLKPETPGSCATNASEHYRILVDFNALTGDTHRDKCLEKLLQSVQFIFNSDDSTKKEDKVNDNSDAVNNGNNDKSSEVANECKDKAQQSSKSFIWPDVAVPAVVALEKASHETFSSDYQKYNQKLRQLVFNLKNNAILARRLLNGELEPSKILNMTPNELKEGLTAEETNKKEPDESQQMQMTGARCRRCSECKVGLRDIIHAGHGDRYQLECIACGHSWFASRDEVSDLTIDASDSKRSVGTAPWATAKFEDVEKKLVSPRESEKNDIFKKTSEAYMPVLDAQKSFGKSRKDENVQASKQVD 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00583 618 PANTHER BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN 1 612 - -
Viun3g00583 618 MobiDBLite consensus disorder prediction 301 326 - -
Viun3g00583 618 ProSiteProfiles BAH domain profile. 126 245 IPR001025 GO:0003682
Viun3g00583 618 Pfam Transcription factor S-II (TFIIS), central domain 343 494 IPR003618 GO:0006351
Viun3g00583 618 Gene3D - 327 477 IPR036575 GO:0006351
Viun3g00583 618 ProSiteProfiles TFIIS central domain profile. 347 503 IPR003618 GO:0006351
Viun3g00583 618 MobiDBLite consensus disorder prediction 601 618 - -
Viun3g00583 618 CDD BAH_plant_3 108 254 - -
Viun3g00583 618 MobiDBLite consensus disorder prediction 34 50 - -
Viun3g00583 618 MobiDBLite consensus disorder prediction 599 618 - -
Viun3g00583 618 SMART BAH_4 126 245 IPR001025 GO:0003682
Viun3g00583 618 MobiDBLite consensus disorder prediction 301 315 - -
Viun3g00583 618 MobiDBLite consensus disorder prediction 60 99 - -
Viun3g00583 618 MobiDBLite consensus disorder prediction 367 392 - -
Viun3g00583 618 Pfam BAH domain 127 243 IPR001025 GO:0003682
Viun3g00583 618 Coils Coil 33 82 - -
Viun3g00583 618 SMART mid_6 380 485 IPR003618 GO:0006351
Viun3g00583 618 MobiDBLite consensus disorder prediction 1 119 - -
Viun3g00583 618 Gene3D - 91 262 IPR043151 -
Viun3g00583 618 SUPERFAMILY Elongation factor TFIIS domain 2 342 476 IPR036575 GO:0006351
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00583 Viun-Chr3 3597497 3604169 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00583 - - gmx:100787670 1025.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00583 3 3597497 3604169 Viun3g00583 3 3597497 3604169 ECH
Viun2g02587 2 31842122 31847389 Viun3g00583 3 3597497 3604169 PCT