LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun2g02587	ATGGTGAATCGTCGACGCCTGACTCGGGTGGCGACGAGCGATGACGAAGACGAAGCACCACGACCACAACCCACGCGCAAGAGGATGAGGCTTCTTGAGGAAGATAACGATGACGACGAGAATGAAGAGGAAGAAAAAGATGAGGTACCGGAACCGCCTCCACCCTTGGAGGACGCTAAGCCTATTGGCGAGCCTGTTAGGGTTTCGGGAAAAGGAAGGGGCAGGAAAAGGCACTATGATTCCTTCGAGTTCGATGGCATCCAATATACTCTCGAGGATCCTGTTCTTCTTGTACCGGAGGACAAAGGCCAAAAGCCATATGTTGCAATTATTAAGGACATTACACAGTCTATCAGTGGCAACGTGAAAGTAACGGGACAATGGTTTTATCGCCCAGAAGAAGCTGAGAAAAAAGGTGGTGGAAACTGGCAATCGTGTGATACGAGGGAGCTATTTTATAGTTTTCATCGTGATGATGTTCCTGCGGAGTCTGTTATGCATAAGTGTGTTGTGCATTTTGTTCCCAGACACAAACAGCTTCCAAAACGTAAGGATCACCCTGGTTTTATTGTACAGAAGGTGTATGACACTGTGGAAAGAAAGCTCTGGAGGCTGAGTGATAAGGACTATGAGGATATTAAGCAGCAAGAAATTGATGTGCTTGTTCAAAAGACTCTGGAACGTATCGGTGAACTTCTTGACATTGAGCCTAAGGAGGAAGCCCCTGATTATGACGAGGACCAGATAAAGCATAGAAGAAGCTTGAACAGAAAAAGTCTTTCACCTCCCAATGCTTCAAAGGAAGAGGAGGAAACACCCAGGAGTGAACAGCATCCAAAATCAGAAACACCCAGGAGTGAACAGCATCCAAAATCAGAAACACCAGTGAGTTGTGTAACTAATAATGCCTCAGAGTATTATGGCATATTGGTAGAATTCAACGCGCTAACTGGAGATAGCCATCGAGACAAATGGTTGGAGAGGTTGCTTCAACGCATTCAGTACGTGTGTGATTGTAATGCTAGCAAAGAAAGGGACAAAAGATTGGGAAATGGCAATTCTGATGAAATCAACGGTGGAAGCAAGCATATAAGTTCAGAGTCACTAAACGACTGTCAAGATAAGTTTCAGAAGAATTCCAAGTCTTTTATCTGGCCAGATGCTGCTGTTTCAGCCATAGTTTCTCTCGAAAAGGCTTCACATGACGCTCTCTCATCAGATTTTATGAAATACAACCAAAAGTTGAGGCAATTAGCTTTTAATCTGCAGAAAAATGCAGTGTTAGCATGCCGTTTATTAAGCGGAGAGTTGGAACCTTCAAAAATATTAAACATGACACCCAATGAATTAAAGGAGGGTTTGGTTGCTGACAAAAGAACCAAGGAGAAATCTGACGAGACCCAACACTTGCAAATGACAGATGGCCGCTGCCCAAAATGCATGGAATGTAAGGTGGGGTTGAGAGAGATTATCCATGCTGGAAATAATGAACGATATCAGTTGGAATGCGTTTCATGCGGTCATTCCTGGTATGCCTCTAGAGATGAGGTGTCTATGCCTATCGTAGATTCATCTGATTCAAAAAGAAACACAGGCACAGCGCCGTAG	1608	0.4422	MVNRRRLTRVATSDDEDEAPRPQPTRKRMRLLEEDNDDDENEEEEKDEVPEPPPPLEDAKPIGEPVRVSGKGRGRKRHYDSFEFDGIQYTLEDPVLLVPEDKGQKPYVAIIKDITQSISGNVKVTGQWFYRPEEAEKKGGGNWQSCDTRELFYSFHRDDVPAESVMHKCVVHFVPRHKQLPKRKDHPGFIVQKVYDTVERKLWRLSDKDYEDIKQQEIDVLVQKTLERIGELLDIEPKEEAPDYDEDQIKHRRSLNRKSLSPPNASKEEEETPRSEQHPKSETPRSEQHPKSETPVSCVTNNASEYYGILVEFNALTGDSHRDKWLERLLQRIQYVCDCNASKERDKRLGNGNSDEINGGSKHISSESLNDCQDKFQKNSKSFIWPDAAVSAIVSLEKASHDALSSDFMKYNQKLRQLAFNLQKNAVLACRLLSGELEPSKILNMTPNELKEGLVADKRTKEKSDETQHLQMTDGRCPKCMECKVGLREIIHAGNNERYQLECVSCGHSWYASRDEVSMPIVDSSDSKRNTGTAP	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun2g02587	535	ProSiteProfiles	TFIIS central domain profile.	321	478	IPR003618	GO:0006351
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	347	366	-	-
	Viun2g02587	535	SMART	BAH_4	87	206	IPR001025	GO:0003682
	Viun2g02587	535	SUPERFAMILY	Elongation factor TFIIS domain 2	316	451	IPR036575	GO:0006351
	Viun2g02587	535	Coils	Coil	29	49	-	-
	Viun2g02587	535	SMART	mid_6	355	460	IPR003618	GO:0006351
	Viun2g02587	535	PANTHER	BROMO-ADJACENT HOMOLOGY (BAH) DOMAIN-CONTAINING PROTEIN	1	535	-	-
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	35	51	-	-
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	237	298	-	-
	Viun2g02587	535	Pfam	BAH domain	88	202	IPR001025	GO:0003682
	Viun2g02587	535	CDD	BAH_plant_3	69	215	-	-
	Viun2g02587	535	Gene3D	-	305	452	IPR036575	GO:0006351
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	1	75	-	-
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	237	254	-	-
	Viun2g02587	535	Pfam	Transcription factor S-II (TFIIS), central domain	317	468	IPR003618	GO:0006351
	Viun2g02587	535	ProSiteProfiles	BAH domain profile.	87	206	IPR001025	GO:0003682
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	263	289	-	-
	Viun2g02587	535	Gene3D	-	70	304	IPR043151	-
	Viun2g02587	535	MobiDBLite	consensus disorder prediction	8	34	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun2g02587	Viun-Chr2	31842122	31847389	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun2g02587	-		-	gmx:100776280	865.529

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun2g02587	2	31842122	31847389	Viun3g00583	3	3597497	3604169	PCT