Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun3g00053 ATGATCACTGTAACCGACTTTTACCACGTCATGACCGCAATGCTGCCACTCTACGTGGCCATGATACTCGCTTATGGTTCCGTGAAATGGTGGAAAATCTTCTCCCCGGACCAATGCTCCGGCATAAACCGTTTCGTTGCTCTATTCGCCGTCCCTTTACTCTCCTTCCACTTCATCGCGTCCAACAACCCCTACGAGATGAACTTCCGGTTCATCGCTGCGGACACGCTGCAGAAGATCATCGTGCTGGTGGTGCTGACCATCTGGAGCAACGTGAGCAAGAGGGGGCGTTTGGAATGGGCCATAACGCTGTTCTCAATCTCCACCCTCCCCAACACGCTGGTGATGGGTATTCCGTTGCTGAAGGGGATGTACGGGGAGTTCTCCGGGAGTTTGATGGTGCAGATAGTGGTGCTCCAGTGCATCATCTGGTACACCTTGATGCTGTTCATGTTCGAGTACAGAGGCGCCAGAATGTTGATCTCTGAGCAGTTCCCCGACACTGGCGCCACCATTGTCTCCATCCACGTGGACTCCGACGTCATGTCGCTTGATGGACGACAACCTTTGGAAACCCAAACCCAAATCAAAGAAGACGGCAAGCTCCACGTCACCGTCAGAAAATCCAACGCCTCCAGATCCGACATCTTTTCTAGAAGGTCCCAGGGCTTCTCTTCCACCACCCCTCGCCCTTCCAACCTCACCAATGCAGAGATTTACTCTCTCCAATCCTCCGCAAACCCCACTCCCAGAGCCTCCAGCTTCAACCACTCCGACTTTTACTCCGTCATGGCCCCTCCTCGTAACTCCAACTTCGCCACCAACGACGTTTATGGCTTCTCTGCTTCCAGAGGACCAACTCCCAGACCTTCCAATTACGACCAAGATGCTTCCACTGCTGCTAATACTAAAAACAACGACAAACCTAGACATCATTACCCTGTCTTCTCCCACCCCAATGGTCTCAAGAAGCCCAATGGACACCCCCACCCCAAGCCAGAGGATTCAAACAAGGACCTTCATATGTTCGTTTGGAGTTCAAGTGCTTCCCCTGTCTCCGACGTGTTTGCCGGACATGAAAACGATCATAAAGAAGTGAAGCTCGCTGTGTCTCCCAAAAAAGTGGAGGGTAACAGAGAAGGTCAAGAAGAGTACCTTGAGAATGAGCATGAAGGTGAGAAAGTTGGGAACGGAAATCAGAAAACCATGCCTCCAACGAGTGTAATGACACGGCTTATTTTGATCATGGTGTGGAGGAAACTCATCCGAAACCCCAACACCTACTCCAGCCTCATGGGTCTAACTTGGTCACTTGTTTCATTCAGGTGGAAAGTTGAAATGCCTACCATAATTGCCAAGTCCATTTCCATATTGTCAGATGCAGGGCTTGGTATGGCCATGTTTAGTCTTGGTCTGTTCATGGCTTTGCAACCGAGGATCATAGCATGTGGAAATTCCACAGCAGCTTTTTCCATGGCCGTGAGATTCCTTACAGGTCCAGCTGTCATGGCAGCTGCTTCCATGGTCGTTGGACTCAAAGGTGTTCTCTTACACGTTGCCATTGTTCAGGCAGCTCTTCCTCAGGGAATTGTCCCATTTGTGTTTGCAAAGGAATACAATGTGCATCCTGATATTCTCAGCACAGGAGTTATTTTTGGGATGTTGATTGCATTGCCTATTACACTGGTGTACTACATCTTGCTGGGGTTATGA 1713 0.5003 MITVTDFYHVMTAMLPLYVAMILAYGSVKWWKIFSPDQCSGINRFVALFAVPLLSFHFIASNNPYEMNFRFIAADTLQKIIVLVVLTIWSNVSKRGRLEWAITLFSISTLPNTLVMGIPLLKGMYGEFSGSLMVQIVVLQCIIWYTLMLFMFEYRGARMLISEQFPDTGATIVSIHVDSDVMSLDGRQPLETQTQIKEDGKLHVTVRKSNASRSDIFSRRSQGFSSTTPRPSNLTNAEIYSLQSSANPTPRASSFNHSDFYSVMAPPRNSNFATNDVYGFSASRGPTPRPSNYDQDASTAANTKNNDKPRHHYPVFSHPNGLKKPNGHPHPKPEDSNKDLHMFVWSSSASPVSDVFAGHENDHKEVKLAVSPKKVEGNREGQEEYLENEHEGEKVGNGNQKTMPPTSVMTRLILIMVWRKLIRNPNTYSSLMGLTWSLVSFRWKVEMPTIIAKSISILSDAGLGMAMFSLGLFMALQPRIIACGNSTAAFSMAVRFLTGPAVMAAASMVVGLKGVLLHVAIVQAALPQGIVPFVFAKEYNVHPDILSTGVIFGMLIALPITLVYYILLGL 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun3g00053 570 MobiDBLite consensus disorder prediction 373 403 - -
Viun3g00053 570 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 570 - -
Viun3g00053 570 Pfam Membrane transport protein 9 565 IPR004776 GO:0016020|GO:0055085
Viun3g00053 570 MobiDBLite consensus disorder prediction 213 235 - -
Viun3g00053 570 MobiDBLite consensus disorder prediction 276 338 - -
Viun3g00053 570 MobiDBLite consensus disorder prediction 276 304 - -
Viun3g00053 570 NCBIfam auxin efflux carrier 1 570 IPR014024 -
Viun3g00053 570 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun3g00053 Viun-Chr3 239788 242959 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun3g00053 1 561 Organic Solute Cotransporters AT1G73590 68.071 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun3g00053 K13947 - gmx:100786572 971.074
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun3g00053 3 239788 242959 Viun3g00053 3 239788 242959 ECH
Viun3g00053 3 239788 242959 Viun4g00384 4 2526958 2530771 PCT