Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02680 ATGGCATCGCGCGTCAGCATTGGCAACCTCACATCCACCAAACCACCGTATGTTATTAACTCACCTCGTTTTTGTTCACCGCATAAATCTTCTAACGCTCCTTCTCACCAAAACGCTGCGCAACACAACAACAACAACATCATGCTCCAAAGAAACGTTCTTGTAACCGGTGGAGCCGGATACATCGGAAGCCACACCGTTCTTCAACTACTTCTCGGCGGTTTCACGACCGTCGTCGTCGACAACCTCGACAATTCCTCCGAGGTTGCCCTCCAAAGAGTCCGGAAGCTCGCCGGCGAGTTTGGGAATAACCTATTCTTCCACAAGGTGGACCTAAGGGACAGAGCGGCTCTAGAGCAAATTTTTGTTTCCACACAGTTTGATGCTGTCATACATTTTGCTGGACTGAAAGCAGTGGGAGAAAGTGTGCAAAAGCCTTTACTATACTACAACAACAACTTGACTGGGACAATCACTCTATTGGAAGTCATGGCTGCCCATGGATGCAAAAAGCTTGTGTTCTCGTCTTCAGCAACTGTATATGGTTGGCCAAAGGAGGTTCCCTGTACAGAAGAGTTCCCTCTGTCAGCGATGAACCCATACGGCCGAACTAAGCTTATCATTGAAGAAATTTGTCGTGATGTCCACCAAGCGGAGCCAGATTGGAAAATAATATTGTTAAGGTATTTCAACCCAGTTGGTGCACACGCTAGTGGTTATATTGGAGAGGATCCTCGTGGAATTCCAAACAATCTCATGCCATTTGTTCAACAAGTAGCAGTTGGCAGACGACCTGCTCTGACAGTTTTTGGAAATGATTATAATACAGTTGATGGCACTGGGGTTCGGGATTATATTCACGTTGTTGATTTAGCTGATGGGCACATTGCTGCATTACTTAAACTAGACGAACCTAATATAGGTTGTGAGGTTTATAACCTGGGAACAGGAAAGGGAACATCGGTTCTGGAGATGGTTAGGGCTTTTGAAGCTGCATCTGGAAAGAAAATTCCTCTTGTGATGGCTGGCCGTAGACCTGGTGATGCTGAAATTGTTTATGCATCCACTAAAAAAGCGGAAAGAGAGCTTAAATGGAAGGCAAAATATGGTATTGATGAGATGTGCCGTGATCAATGGAACTGGGCTAGCAAAAACCCTTACGGCTATGAAGATCAGGAGGACTCCACTGATTAA 1194 0.4556 MASRVSIGNLTSTKPPYVINSPRFCSPHKSSNAPSHQNAAQHNNNNIMLQRNVLVTGGAGYIGSHTVLQLLLGGFTTVVVDNLDNSSEVALQRVRKLAGEFGNNLFFHKVDLRDRAALEQIFVSTQFDAVIHFAGLKAVGESVQKPLLYYNNNLTGTITLLEVMAAHGCKKLVFSSSATVYGWPKEVPCTEEFPLSAMNPYGRTKLIIEEICRDVHQAEPDWKIILLRYFNPVGAHASGYIGEDPRGIPNNLMPFVQQVAVGRRPALTVFGNDYNTVDGTGVRDYIHVVDLADGHIAALLKLDEPNIGCEVYNLGTGKGTSVLEMVRAFEAASGKKIPLVMAGRRPGDAEIVYASTKKAERELKWKAKYGIDEMCRDQWNWASKNPYGYEDQEDSTD 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02680 397 PRINTS Nucleotide sugar epimerase signature 283 298 - -
Viun2g02680 397 PRINTS Nucleotide sugar epimerase signature 309 324 - -
Viun2g02680 397 PRINTS Nucleotide sugar epimerase signature 348 365 - -
Viun2g02680 397 PRINTS Nucleotide sugar epimerase signature 79 95 - -
Viun2g02680 397 FunFam UDP-glucose 4-epimerase 4 325 393 - -
Viun2g02680 397 Pfam GDP-mannose 4,6 dehydratase 54 377 IPR016040 -
Viun2g02680 397 FunFam UDP-glucose 4-epimerase 53 246 - -
Viun2g02680 397 CDD UDP_G4E_1_SDR_e 52 381 IPR005886 GO:0003978|GO:0006012
Viun2g02680 397 Gene3D - 241 382 - -
Viun2g02680 397 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 390 IPR036291 -
Viun2g02680 397 Gene3D - 53 322 - -
Viun2g02680 397 PANTHER UDP-GLUCOSE 4-EPIMERASE 50 394 - -
Viun2g02680 397 NCBIfam UDP-glucose 4-epimerase GalE 52 387 IPR005886 GO:0003978|GO:0006012
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02680 Viun-Chr2 32325475 32329551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g02680 52 366 Miscellaneous Gene Families AT4G00110 28.228 8.93e-22 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02680 K01784 - gmx:100792137 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02680 2 32325475 32329551 Viun2g02680 2 32325475 32329551 ECH
Viun2g02680 2 32325475 32329551 Viun3g00461 3 2746959 2750982 PCT