Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g02009 ATGGTTTCTTCTTATGTTTGTCTCAATTCCACCATGCTCAGCACACCTTCACCTCTCTTTTTCACTCCCCCTTCCCGCACTCTCACGCTGCTTCTCAATCCCACCAAACCACAAACGTCAAAACTCTCATCTTTCCACTCTCTCTCGGTCTCTGCTGTGCCTGCTAAGGTAGACACTACAGTGAAAATAGCAGAAATCGAAGATCCCCCAAACTTTGATTTCAAAGTCTACATGCTCCACAAGGCCCACACTGTGAACCAAGCTTTGGACGCAGCCATTGCGCTGCGCGACCCGGAGAAGATTCACAAAGCTATGCGTTACTCTCTCCTCGCCGGCGGCAAGAGGGTCCGCCCCATCCTCTGCGTCGCTGCCTGCGAGCTCGTCGGTGGCGACGAGGCCACCGCCATCCCCGCTGCCTGTGCAGTCGAGATGATCCATACCATGTCGCTCATCCACGACGATCTGCCCTGCATGGACAACGACGACCTCCGCCGCGGCAAGCCCACCAACCACAAGGTGTTTGGTGAGGACGTGGCTGTTCTCGCCGGCGACGCGCTGCTTGCGTTCGCGTTTGAGCACTTGGCGGCAGCAACCGAGGGTGTTTCCCCAGCACGCGTGGTTCGTGCGATTGGAGAGTTGGCGAAATCGATTGGCGGGGATGGCCTTGTGGCGGGACAGGTGGTGGATTTGGATTCGGAGGGGGCCTCTAATGTGGGATTGGAGAGGTTGGAATTCATTCATGTGCACAAAACGGCGGCGTTGCTGGAAGCTGCGGTTGTGCTGGGCGCAATTGTGGGCGGTGGGTCGGACGAGGAGGTTGAGAAATTAAGGAAATTCGCTAGGTGCATTGGGTTGTTGTTTCAGGTGGTGGATGACATTCTGGATGTAACTAAGTCGTCCGAGGAATTAGGGAAGACGGCGGGGAAGGACCTGGTGGCTGATAAGGTCACGTACCCTAAACTTTTAGGGATACATAAGTCCAAAGAGTTTGCTGAGAAACTGTTGCAGGATGCGCAGGAGCAATTGTTTGGATTTGATCCCAGAAAGGCAGCTCCTTTAATTGCATTAACCAATTACATTGCTTATAGGCAAAATTAA 1098 0.5373 MVSSYVCLNSTMLSTPSPLFFTPPSRTLTLLLNPTKPQTSKLSSFHSLSVSAVPAKVDTTVKIAEIEDPPNFDFKVYMLHKAHTVNQALDAAIALRDPEKIHKAMRYSLLAGGKRVRPILCVAACELVGGDEATAIPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDALLAFAFEHLAAATEGVSPARVVRAIGELAKSIGGDGLVAGQVVDLDSEGASNVGLERLEFIHVHKTAALLEAAVVLGAIVGGGSDEEVEKLRKFARCIGLLFQVVDDILDVTKSSEELGKTAGKDLVADKVTYPKLLGIHKSKEFAEKLLQDAQEQLFGFDPRKAAPLIALTNYIAYRQN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g02009 365 CDD Trans_IPPS_HT 97 363 IPR000092 GO:0008299
Viun2g02009 365 ProSitePatterns Polyprenyl synthases signature 1. 150 166 IPR033749 -
Viun2g02009 365 FunFam Geranylgeranyl diphosphate synthase 71 365 - -
Viun2g02009 365 SFLD Isoprenoid Synthase Type I 79 363 - -
Viun2g02009 365 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 40 365 - -
Viun2g02009 365 ProSitePatterns Polyprenyl synthases signature 2. 283 295 IPR033749 -
Viun2g02009 365 SFLD Polyprenyl Transferase Like 79 363 - -
Viun2g02009 365 Gene3D Farnesyl Diphosphate Synthase 67 365 IPR008949 -
Viun2g02009 365 Pfam Polyprenyl synthetase 99 336 IPR000092 GO:0008299
Viun2g02009 365 SUPERFAMILY Terpenoid synthases 77 343 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g02009 Viun-Chr2 28546153 28547418 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g02009 K13789 - gmx:100778289 523.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g02009 2 28546153 28547418 Viun2g02009 2 28546153 28547418 ECH
Viun3g03713 3 44071517 44073080 Viun2g02009 2 28546153 28547418 ECH
Viun2g02009 2 28546153 28547418 Viun3g03713 3 44071517 44073080 PCT