Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun2g01420 ATGGCAGCGAGCAACAATGTGATTGTATGCATAAACCTCGTGGCCGTGATCCTCTCAATCCCGATCATCGGCGCCGGAATCTGGCTAGCAAACGGCCAGGCAGACACCTGCGTCCAGTTTCTGCAGTGGCCCGTCATCATCCTCGGAGTTCTCATCTTGGTGGTGGCTCTCGCAGGTTGCATTGGAGCCTTTTTCAGAATCACCTGGCTCCTCGTAGTGTACCTCGTTGTCATGCTCGTGCTGGTGATACTTTTAGTCTGTCTGGTGGGCTTTGTTTACATGGTCACGCTTCGAGGTCATGGCAACATTGAAGCTGACAGAGCTTACTTGCAATATCATATGAACGACTTTTCTGGGTTCCTTCGTCGAAGGGTTAGAAGCTCCTTCAAGTGGGATCGCATCAGAAGCTGCATTAGCCAAACCAACGTGTGTGCTGAACTCAGCCAGAGTTACAGAATGGCCGAGGACTTTTTCAACGCACATCTAACGCCCATGCAGTCAGGGTGTTGCAGGCCACCAACGCAATGTGGGTATACGTTTGTGAACCCAACCTATTGGATTAGAGCGTTCAACCTAGGAGCAGATATGGATTGTCTGCAATGGAGCAACGATCAAACACAACTTTGCTACAACTGTGACTCGTGCAAGGGTGGTTTATTGGCTAATCTTAGGAAGGAGTGGAAAAGGGCCAATGTGATATTAATCATCACAGTCATTGTTCTAATTGTGGTGTATTTGGTAGGGTGCTGTGCCTTTAGGAATGCCAAAACTGAGGACCTCTTCCGCAAGTACAAACAGGGGTATACTTGA 810 0.4877 MAASNNVIVCINLVAVILSIPIIGAGIWLANGQADTCVQFLQWPVIILGVLILVVALAGCIGAFFRITWLLVVYLVVMLVLVILLVCLVGFVYMVTLRGHGNIEADRAYLQYHMNDFSGFLRRRVRSSFKWDRIRSCISQTNVCAELSQSYRMAEDFFNAHLTPMQSGCCRPPTQCGYTFVNPTYWIRAFNLGADMDCLQWSNDQTQLCYNCDSCKGGLLANLRKEWKRANVILIITVIVLIVVYLVGCCAFRNAKTEDLFRKYKQGYT 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun2g01420 269 ProSitePatterns Transmembrane 4 family signature. 49 71 IPR018503 GO:0016020
Viun2g01420 269 Pfam Tetraspanin family 6 251 IPR018499 GO:0016020
Viun2g01420 269 PANTHER TETRASPANIN-8-RELATED 1 258 IPR044991 GO:0009734|GO:0016020
Viun2g01420 269 PRINTS Transmembrane four family signature 38 64 - -
Viun2g01420 269 PRINTS Transmembrane four family signature 65 93 - -
Viun2g01420 269 PRINTS Transmembrane four family signature 6 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun2g01420 Viun-Chr2 24697719 24699040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun2g01420 1 269 Miscellaneous Gene Families AT5G46700 67.286 5.44e-132 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun2g01420 - - gmx:100791755 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun2g01420 2 24697719 24699040 Viun2g01420 2 24697719 24699040 ECH
Viun2g01420 2 24697719 24699040 Viun3g03103 3 37321815 37323848 PCT