Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g03247 ATGGAAAACTCGGACGAAAGAAACGAATCACTTCCCTTCTCTCCAAACCCTAACAATGCCGACGACGACGAAATCGACGAACAAGAAGACGAAGAGGAAGAGGAAGAAGATGACGGTCACGACGACGTCGTTTCGCACGAGCCGTACAATCGGAACGACCGATCCTCATTGTCGAGTTTGCGCGAGCAGCGTTCAAAGCTGGAAACCCTCTCCCGGCGATTGGCTTCGGAGTTGGTACCTATCCGCGTCCACGATGTGCTGATTCGAGGCAACACCAAGACCAAGGATTGGGTGATCGAGGCGGAGCTCAAGCTTCTCCAGGACGCCGCCACCGTGCAGGAGCTCATTCGCGCCTCCGAAATCGCCCTCGCCAGGCTCCGTAGCCTCGAGATTTTCGAGTCCACCGAGCTCACGCTTCAGGCTGGGCCGCCGGAGCTGCCTCACACCGCCAATGTCATCGTCGATGTCGTCGAGACCGCCAACAAAGTCTCCGGCGAATTCGGCGTTTACACCAAACCCTCGACAAGTTCGTGGACTGCTGAAGGGGGTCTTAAGTACAAAAACTTGTTAGGTTATGGTGATCTATGGGATGCCTCTTTGGCCTATGGTGGAAACCAAGCAACAGAGGTGAGTGTAGGAGTGTTTGCTCCAAGACTGAAAGGGTTGTTAACTCCTCTTGTAGCACGACTTTCCATGCTTTCCCAAGATTGGCAAGAGTTTTCTTCATACAAAGAGCAGCTGTTAGGATTGTCTCTTGGCTTAATCTCAACCAGGCACCATGACTTAGTCTACACTCTTGGATGGCGTACCTTGACTGATCCATCTCAAATGTCATCCAGGTCTATAAGGAGGCAGCTTGGGCATGGTTTATTATCATCTTTGAAGTATACATTTAAAATTGACAGGAGAAACTCGCCAATTAGGCCTACAAGTGGATATGCTTTTCTGTCCACTACTCACTTTGGTGGCCTTACACCAGATCATCGGAGCTTGCGATTTCTGCGCCAGGAATTTGATGTTCGCTGTGCCATCCCCTTTGGGTTTTATAACACAGCTCTTAACCTTGGGATTTCAGCTGGTGTCGTTTTTCCATGGGGGCATGACTTCATGAACAAGCCATCTCCTCTTCCTGAAAGGTTTTATTTGGGTGGTGATTTCTCTCCAGTTTGCACCCTAGGAGGGCCAATAACATTGTGGGGGTTTAAAACTAGGGGATTAGGTCCTACTGAACCACGAAGGAGAAATAGAAATGAAATTATTGATGACAATGACGATTCCTCTAAATGGGACTTCGTTGGAGGAGATGTTGCTGTTACGGCATTTGCAGACCTGTCTTTTGATCTCCCAGTTAGGTGGTTGAGAAATCATGGAATCCATGGTCATCTTTTTGCTGGTGCTGGGAATACTGCAAAATTGACTCAGAATGAATATAAGCGCTTTTCACCTCAGAAGTTCTTAGAATCATTCCGAACATCAGTTGGATGTGGTTTTGTTGTTCCTACTAAGCTTTTTCGCCTAGAGGGTAACTTCTACTACGTGCTAAAGCAGGATGAACATGATCGTGGGAAGACAGGATTTAGGTTCAGCTTCTCAGCTCCTTCATAG 1605 0.4822 MENSDERNESLPFSPNPNNADDDEIDEQEDEEEEEEDDGHDDVVSHEPYNRNDRSSLSSLREQRSKLETLSRRLASELVPIRVHDVLIRGNTKTKDWVIEAELKLLQDAATVQELIRASEIALARLRSLEIFESTELTLQAGPPELPHTANVIVDVVETANKVSGEFGVYTKPSTSSWTAEGGLKYKNLLGYGDLWDASLAYGGNQATEVSVGVFAPRLKGLLTPLVARLSMLSQDWQEFSSYKEQLLGLSLGLISTRHHDLVYTLGWRTLTDPSQMSSRSIRRQLGHGLLSSLKYTFKIDRRNSPIRPTSGYAFLSTTHFGGLTPDHRSLRFLRQEFDVRCAIPFGFYNTALNLGISAGVVFPWGHDFMNKPSPLPERFYLGGDFSPVCTLGGPITLWGFKTRGLGPTEPRRRNRNEIIDDNDDSSKWDFVGGDVAVTAFADLSFDLPVRWLRNHGIHGHLFAGAGNTAKLTQNEYKRFSPQKFLESFRTSVGCGFVVPTKLFRLEGNFYYVLKQDEHDRGKTGFRFSFSAPS 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g03247 534 FunFam Outer membrane OMP85 family protein 80 159 - -
Viun1g03247 534 FunFam Outer membrane OMP85 family protein 170 532 - -
Viun1g03247 534 Coils Coil 57 77 - -
Viun1g03247 534 Pfam Omp85 superfamily domain 188 531 IPR000184 GO:0019867
Viun1g03247 534 PANTHER SORTING AND ASSEMBLY MACHINERY SAMM50 PROTEIN FAMILY MEMBER 32 531 IPR039910 -
Viun1g03247 534 MobiDBLite consensus disorder prediction 1 61 - -
Viun1g03247 534 Gene3D membrane protein fhac 80 159 - -
Viun1g03247 534 Gene3D membrane protein fhac: a member of the omp85/tpsb transporter family 170 532 - -
Viun1g03247 534 Coils Coil 18 38 - -
Viun1g03247 534 MobiDBLite consensus disorder prediction 20 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g03247 Viun-Chr1 40220111 40224635 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g03247 K07277 - gmx:100785408 917.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g03247 1 40220111 40224635 Viun1g03247 1 40220111 40224635 ECH
Viun1g03247 1 40220111 40224635 Viun8g02367 8 33571238 33576683 PCT