Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02658 ATGATGCCTAAACCCGTGAACGTTTTGGCAACAAAGCCCTCACCTTTGAGTACCATGGTGGTGGTGCTGATACTCTGCATTCTGGGTTTCTACGCTCTGCATTTCCCTCACTCTTCTACACCTTCCTCCTCCTCCTCCTCTCAAAACCTCTCTCAGGTGGAAAAACTTTTTCTCTCCGCTTCCTCAAACTCCACCATTTCTTCCTACCTCCGCGCTCTCACCCTGCACCCTCACCTCGCCGGAACAAAACCCGGCTCCGACGTCGCCAGCTATGTCCTCAACCACTTCACTTCATTGGGACTCAAGACCCACACGGCGACCTACACCACGCTTCTCTCTTTCCCGGTTCACTCCTCCCTCTCAGCGCATTTTAGCGAAGGCGGCCCCTCGGTGAGCCTCCGCCTCACGGAGCCGGCAGCCGCGGGCGTGGTTCAGGCCTACCACGCGTACTCGCCGTCGGGTGCGGTGCAGGCGCGTGCGGTGTTCGCGAACTACGGGAGGGAGAGGGACTACCGCGCGCTGGGCGCTATGGGAGTGAACGTGAGCGGGTGCGTGGTGGTTGTGCGGAAGGGCGGGGAGATGGGGCGCGGCACAGTAGTGGAGAGAGCGGAGGCGCACGGGGCGGCGGCGGTGTTGGTTTACGGCGAGGGTGACACGTGGCGGAAGGGGTTTGAGAGGGGGCACGTGATGAGGGGAGGAATAGGGGACCCACTCACTCCTGGTTGGGCTGGGGTTGAGGGTGGCGAGACACTGGGATTGGAAGATAGGGAAGTCTTGAAAAGGTTCCCCAAAATTCCATCTATGCCTTTATCAGCTGAGGTGGCAGACTCTATTTTGTCCTCTCTTGGGGGTGCTCCTGTGCCTCTTCAATGGAGGGGCACCCTAAGGTCTAAGGTCAGACATGTTGGTCCTGGCCCCACCATCCTCAATTTCACTTACCAGGGTGAAAAGAAGGTGGCCAACATTGAAAATGTTTTTGCTGTCATAAAGGGGTCAGAAGAACCTGATCGATATGTTCTGCTGGGGAACCACAGAGATGCATGGACGTATGGTGCTGTTGATCCCAGCAGTGGGACAGCTGCACTACTTGACATTGCTCGTCGGTTTTCTGTTCTATTGGGTTTGGGGTGGAAGCCAAGGAGGACAATAATTCTCTGCAGTTGGGATGCTGAGGAATTTGGGATGATAGGATCAACTGAATGGGTTGAACAAAACCTTCTTAATCTGGCTTCCAAAGCTGTAGCATACCTTAATGTGGACTGTGCTGTTCAGGGCCCTGGTTTCTTTGTTGGCTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGGTCAAGGATCCTGATTCTGAGGGTGTATCACTATATGAGAATTGGGTTGCTGCTTCTGCTGGAAGCAATAACATTCAGAGGCTCAGTGGAGTTGATTCTGATTTTGCTCCATTTGTGCAACATGCGGGGGTTCCATCCATTGATATGTATTATGGAAGAGATTTCCCTGTCTATCACACTGCATTCGACTCCTATAACTGGATGGCAGAGTATGCAGATCCATTCTTCCACCGCCATGTTGCTGTTACGGGAGTTTGGGGGCTTCTAGCACTTCACTTAGCTGGCGATCCCATTCTTCCTTTCAATTACGTTTCATATGCAAATGAGTTACAGCTATACAAAAACATGTTGAGCAACTTGGTAGATCAGAAAATTTCCTTACATCCATTAACTCTTTCAATTGAAGAATTTGCTTCTGCTGCCAAAGAAGCTGATGATGAATCAAAGAAACTGAGATTGCAGGAAACAGAAGGTTGTGTTTTGGATATCAAAAAACGAGCTTTGAATGATAGACTAATGCTTGCTGAAAAAGGGTTCTTGGATGCAGATGGACTTCAAGGAAAGCAGTGGTTCAAGCATCTCGTGTATGGGCCTTCAAGCAACAATGAAAGGCTCAATTTCTTCCCTGGGATTTCTGATTCTATTACTGGTTCTACGGGTGTTACTGAAACAGAAAGGCTAGCATCAATTCAACATGAGATCTGGAGGGTTGCCAGAGCCATTCGTCGAGCTGCTTCTGCACTCACAGGAGAATTCACTTGA 2100 0.5062 MMPKPVNVLATKPSPLSTMVVVLILCILGFYALHFPHSSTPSSSSSSQNLSQVEKLFLSASSNSTISSYLRALTLHPHLAGTKPGSDVASYVLNHFTSLGLKTHTATYTTLLSFPVHSSLSAHFSEGGPSVSLRLTEPAAAGVVQAYHAYSPSGAVQARAVFANYGRERDYRALGAMGVNVSGCVVVVRKGGEMGRGTVVERAEAHGAAAVLVYGEGDTWRKGFERGHVMRGGIGDPLTPGWAGVEGGETLGLEDREVLKRFPKIPSMPLSAEVADSILSSLGGAPVPLQWRGTLRSKVRHVGPGPTILNFTYQGEKKVANIENVFAVIKGSEEPDRYVLLGNHRDAWTYGAVDPSSGTAALLDIARRFSVLLGLGWKPRRTIILCSWDAEEFGMIGSTEWVEQNLLNLASKAVAYLNVDCAVQGPGFFVGSTPQLDSLILEVTKKVKDPDSEGVSLYENWVAASAGSNNIQRLSGVDSDFAPFVQHAGVPSIDMYYGRDFPVYHTAFDSYNWMAEYADPFFHRHVAVTGVWGLLALHLAGDPILPFNYVSYANELQLYKNMLSNLVDQKISLHPLTLSIEEFASAAKEADDESKKLRLQETEGCVLDIKKRALNDRLMLAEKGFLDADGLQGKQWFKHLVYGPSSNNERLNFFPGISDSITGSTGVTETERLASIQHEIWRVARAIRRAASALTGEFT 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02658 699 Pfam Transferrin receptor-like dimerisation domain 571 694 IPR007365 -
Viun1g02658 699 Coils Coil 580 600 - -
Viun1g02658 699 PANTHER N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE 19 696 IPR039373 -
Viun1g02658 699 SUPERFAMILY PA domain 111 326 IPR046450 -
Viun1g02658 699 Pfam Peptidase family M28 324 512 IPR007484 -
Viun1g02658 699 SUPERFAMILY Transferrin receptor-like dimerisation domain 546 696 IPR036757 -
Viun1g02658 699 CDD M28_PSMA_like 320 547 - -
Viun1g02658 699 Gene3D - 118 315 - -
Viun1g02658 699 SUPERFAMILY Zn-dependent exopeptidases 63 544 - -
Viun1g02658 699 Pfam PA domain 157 218 IPR003137 -
Viun1g02658 699 FunFam N-acetylated-alpha-linked acidic dipeptidase 2 547 697 - -
Viun1g02658 699 Gene3D Zn peptidases 64 546 - -
Viun1g02658 699 Gene3D - 549 699 IPR036757 -
Viun1g02658 699 FunFam Os01g0740650 protein 315 546 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02658 Viun-Chr1 36428635 36432768 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02658 K01301 - gmx:100798131 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02658 1 36428635 36432768 Viun1g02658 1 36428635 36432768 ECH
Viun1g02658 1 36428635 36432768 Viun7g00248 7 1740538 1747093 PCT