Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g02590 ATGGCTCTACCTTACATTATTCTCTTATCTCTAACTCTCATATCTCACACGGCACTCACTTCCTCCACCAACACCAACACCATCACTCTCCCGCTATCGCCTCTACTCACCAAACCCCAATCCTCCGATTCTTTCCATGCTCTCAAACTCGCCGCTTCAGCTTCTCTAACCCGGGCCCACCACCTCAAACACCGCAAAAATGCTCCCTCCGTCGCCACAACCCAAGTCTACCCGAAAAGCTACGGTGGCTACTCCATAGATCTCAACTTCGGAACCCCACCCCAAACCTCCCCCTTCGTTCTCGACACAGGAAGTAGCCTCGTCTGGTTCCCCTGCACCCCCCGCTACACCTGCTCCCACTGTCTCTTCCCAAACATCGACCCCACCAAAATCCACACCTTCATTCCCAAAAATTCCTCCACCGCCAAACTCGTAGGTTGCACGAACCCCAAATGCGGTTACCTCTTCGGCTCCGACCTTCAATCTCGCTGCCCCAATGCCAACCATTCTAAAAATTGTTCCATCACTTCCCCTTACATTATCGAATACGGCTTGGGCTCCACCGCCGGCTTTTTACTCCTCGACAATCTCAACTTCCCTTCAAAAATCGTTCCCCAATTTCTCGTCGGTTGCTCCATCCTCTCCATCCGCCAACCCTCCGGCATCGCCGGCTTCGGTCGCGGCCAAGAGTCTCTCCCTTCACAAATGGCCCTCAAGAGATTCTCTTACTGCTTACTCTCCCACAGCTTCGACGACTCCACGGAAAACAGTGACCTCGTTTTACAAATCAGCTCCACCGGCGACACCAAAACCAGCGGCCTCAGATACACGCCGTTTCACCCCAACCCTTCTGCCAGCAACCCCGCCTTCCTGGAATATTACTATCTCAGCCTCCGCAAGGTCATTGTCGGCGGCAAGAACGTTAAGATTCCGTTTAGCTTTTTGGACCCCGGCTCTGACGGTCACGGCGGCACCATCGTGGACTCTGGATCCACCTTCACTTTCATGGAACGGCCCGTTTATGATTTGGTGGCCCAAGAGTTTGTGAAGCAGCTGGGGAATTATTCCAGGGCGGAGGACGTTGAGGCTCAATCTGGGTTGGGTCCCTGTTTTAATACTTCCGGCGCCAAGACCGTGAATTTCCCGGAGTTTACTTTTCAGTTCAAAGGCGGCGCAAAAATGACGCTGCCGGTGGAAAATTATTTCTCCTTAATCGACGATTCGGAGGTGGTGTGTCTGACCGTTGTCTCCGACGGTGGAGCCGGTCCGGCGATGATGTCCGGTCCCGCCATCATTTTGGGGAACTATCAGCAGCAAAATTTCCTCATTGAATATGATTTGGAGAATGAGAGGTTCGGGTTCGGCCCTCAGAGTTGCAAAAGGAAAAGTTAG 1392 0.5287 MALPYIILLSLTLISHTALTSSTNTNTITLPLSPLLTKPQSSDSFHALKLAASASLTRAHHLKHRKNAPSVATTQVYPKSYGGYSIDLNFGTPPQTSPFVLDTGSSLVWFPCTPRYTCSHCLFPNIDPTKIHTFIPKNSSTAKLVGCTNPKCGYLFGSDLQSRCPNANPXSKNCSITCXPYIIEYGLGSTAGFLLLDNLNFPSKIVPQFLVGCSILSIRQPSGIAGFGRGQESLPSQMALKRFSYCLLSHSFDDSTENSDLVLQISSTGDTKTSGLRYTPFHPNPSASNPAFLEYYYLSLRKVIVGGKNVKIPFSFLDPGSDGHGGTIVDSGSTFTFMERPVYDLVAQEFVKQLGNYSRAEDVEAQSGLGPCFNTSGAKTVNFPEFTFQFKGGAKMTLPVENYFSLIDDSEVVCLTVVSDGGAGPAMMSGPAIILGNYQQQNFLIEYDLENERFGFGPQSCKRKS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g02590 465 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190|GO:0006508
Viun1g02590 465 Gene3D Acid Proteases 65 260 IPR021109 -
Viun1g02590 465 ProSiteProfiles Peptidase family A1 domain profile. 84 457 IPR033121 -
Viun1g02590 465 Pfam Xylanase inhibitor N-terminal 84 261 IPR032861 -
Viun1g02590 465 SUPERFAMILY Acid proteases 79 461 IPR021109 -
Viun1g02590 465 Gene3D Acid Proteases 263 465 IPR021109 -
Viun1g02590 465 FunFam Aspartic proteinase nepenthesin-2 59 261 - -
Viun1g02590 465 Pfam Xylanase inhibitor C-terminal 296 457 IPR032799 -
Viun1g02590 465 PANTHER OS07G0603500 PROTEIN-RELATED 33 461 - -
Viun1g02590 465 FunFam Aspartyl protease family protein 267 464 - -
Viun1g02590 465 CDD pepsin_A_like_plant 83 461 IPR034161 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g02590 Viun-Chr1 35969116 35970715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g02590 61 463 Miscellaneous Gene Families AT1G77480 24.208 1.39e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g02590 - - gmx:100805927 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g02590 1 35969116 35970715 Viun1g02590 1 35969116 35970715 ECH
Viun1g02590 1 35969116 35970715 Viun7g00162 7 1154882 1156509 PCT