Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01989 ATGGAGCTTAGCAAAGTAACGCTCGAGATCTTCTCCAAACTCGAGCAGCAATGGCTTTCCCACTATGAAGCCACTTCCAAAACCCGCATTCTCAGTATCGACGGCGGAGGAACCACCGCCATTGTCTCTGGGACGGCCCTCGTCCACCTCGAGGACCAGATCCGAGCCCATACCTCGGATCCCCACGCGCAAATCGCCGATTACTTCGACATCATCGCCGGAACCGGCATTGGGGCCATCCTCGCAGCCATGATCACCGCCGACGACGGCTTTGGCCGGCCTCTCTACACCGCCCGCGACGCTGTCCACTTCGTCGCCGAGAGCAACGGTGAACTGTTCAAGCCCAAGCGCGCCGGCGTGTTCCGCCGCTGCCGCAGATTCTCATCGCGGAGCATGGAAAACGCGCTGAAGCGGGTTTTCCAAAGAAAAGAGGAAGAGCGACGGTTGTTGACTATGAAGGACACGTGTAAGCCTCTGCTCATCCCTTGCTTTGACCTCAAGAGTTCTGCGCCATTTGTGTTCTCCCGAGCCGACGCGTCCGAGTCACCGAGTTTCAACTTCGAGCTCTGGAAGGCGTGCCGAGCCACTTCTGCCACTCCTGGCCTCTTCGCGCCCTTCCATTTCGCCTCCGTCGACGGTAAGACCTCATGCGCCGCTGTTGACGGCGGCCTGGTGATGAATAATCCTGCCGCTGCGGCCGTCACCCACGTCCTCCACAACAAGCGCGACTTCCCGTCGGTGAACGGTGTGGAGGATCTCCTCGTGCTCTCGATCGGAAACGGAGCGCCGGCTAAGAGAGTAAACACCGCCGGTGAGTGCTCCACATCGACGGTGGTTGACATTGCGCTCGACGGCGTTTCCGAAACCGTTGACCAGATGTTGGGGAACGCCTTCTGTTGGAATCGTACGGATTATGTCAGGATTCAGGCTTTTGGTTTGGGAGAAGGAAAAGAAGAGAAGGTGCTGAACGAGAGAGTGCTGGAATCGTTACCGTTTGGTGGAAAACGATTACTGCAGGAAACTAACGCTAACAGAATCGAGAGCTTCGTGCAACGTCTTGTTGCTACCGGAAAGACTAGTCTGCCACCTAGTCCCTGCAAGGTGCCGCCGTAA 1113 0.5741 MELSKVTLEIFSKLEQQWLSHYEATSKTRILSIDGGGTTAIVSGTALVHLEDQIRAHTSDPHAQIADYFDIIAGTGIGAILAAMITADDGFGRPLYTARDAVHFVAESNGELFKPKRAGVFRRCRRFSSRSMENALKRVFQRKEEERRLLTMKDTCKPLLIPCFDLKSSAPFVFSRADASESPSFNFELWKACRATSATPGLFAPFHFASVDGKTSCAAVDGGLVMNNPAAAAVTHVLHNKRDFPSVNGVEDLLVLSIGNGAPAKRVNTAGECSTSTVVDIALDGVSETVDQMLGNAFCWNRTDYVRIQAFGLGEGKEEKVLNERVLESLPFGGKRLLQETNANRIESFVQRLVATGKTSLPPSPCKVPP 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01989 370 Pfam Patatin-like phospholipase 31 233 IPR002641 GO:0006629
Viun1g01989 370 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 31 234 IPR002641 GO:0006629
Viun1g01989 370 Gene3D Cytosolic phospholipase A2 catalytic domain 17 361 - -
Viun1g01989 370 PANTHER PATATIN-LIKE PROTEIN 6 1 367 - -
Viun1g01989 370 CDD Pat17_PNPLA8_PNPLA9_like 30 330 - -
Viun1g01989 370 SUPERFAMILY FabD/lysophospholipase-like 27 315 IPR016035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01989 Viun-Chr1 31222987 31224611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun1g01989 1 367 Acyl Lipid Metabolism Gene Families AT3G63200 69.973 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01989 - - gmx:100784729 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01989 1 31222987 31224611 Viun1g01989 1 31222987 31224611 ECH
Viun1g01989 1 31222987 31224611 Viun7g01577 7 20356288 20357952 PCT