Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01928 ATGGCGGCTGTCCCAGTATCGCGGACCGATCCACCGGCAATGGTGCCGCCGCCGCTCCTCGTTTCCGATGCCTTCGCCAAGGATGCCATTCTCGCCTGGTTTCGCGGCGAGTTTGCGGCAGCCAACGCCATCATCGACGCACTGTGCGGCCATCTTGCGAGCATCGCTGCTGCCTCCTCCGACTACGAAGCCACCTTCGCAGCCATCCACCACCGCCGAATCAACTGGATCCCTATCATCCAGATGCAGAAGTACCACTCCATCGCTGACGTCGCTCTCGAGCTGCGGAAAGTCGCGGACAGGAAAACGGAGGCTGAAGGCGCCAGGAAGAGCGAGAGTAACTCCGGTGGGGAACAGAAATTGGAGAAGGAAATCGTGGAGACGGGTGGAAATGAAGGTGACGAAGCAGCGCCAGAGTATGATTCGCCGGACAGTGAAATAACTGATTCAGGATCTCAGGAAATGCAACCCAGTGCACTGAACAATAATATATGTTCCAATCATGAAGAATGTGAAGGACGTTCTTCAAAGATAAAGCTGACAAAAGGTTTCTCAGCAAAGGAGTCGGTGAAGGGGCATATGGTGAATGTTGTGAAAGGATTGAAGTTGTACGAGGACGTGTTTTCTGAATCAGAAATTTTCAAACTGACTGATTTTGTGAATGATATTCATGCTGCTGGTCAGAACGGGGAACTCTCAGGCGAAACATTTATACTATTCAACAAACAGATGAAGGGAAACAAGAGAGAGCTGATTCAGTTGGGTGTTCCGATATTTGGACAGATAAAGGATGATACCAAAAGCAATATAGAGCCGATTCCAGCTCTCATCCATGATGTCATCGATCACCTTATTCAATGGAAATTAATTCCAGAGTACAAAAGGCCAAATGGCTGTATCATCAACTTTTTTGAAGAGGGAGAATTTTCTCAACCATTCCTGAAACCACCGCATTTGGACCAGCCTCTATCCACACTTCTTCTCTCTGAATCAACAATGGCATTTGGACGTATCCTTGTCAGTGAAAATGATGGGAACTACAAGGGACCACTCATGCTCTCATTGAAGGAGGGGTCTCTTATAGTGATGAGGGGAAACAGTGCAGACATGGCAAGGCACGTAATGTGTCCATCCCCGAACAGAAGGGTGAGCATGAGCTTCTTTAGAGTGAGGCCAGATTCCAATCAATGCCTATCACCAACTCCTGCCATGACAACTGCGGTGACTCTTTGGCAATCTGGCATTGCTAACCCATATACTTTGTCAAATGGCTATGAAGCAATGGATATGATGCCTAACTGGGGAATATTTGGTGCTCCAATTGTTATGCTACCACCTATGCGTCCTGTGGCAACGAACTCTCGCAAACTTCCTCGCGGTGGGACTGGGGTTTTCTTGCCTTGGAAGGGAACATCCAGAAAACACACAAGGCATCTACCACCTCGTGCCCAGAAGGGACGACTAATGGAATTACCCTCGCCAGTTGAATCACACTTGGGAGAATCTACCTCTGAACCCACCATAGCTGTTGAAGGGTAG 1539 0.4867 MAAVPVSRTDPPAMVPPPLLVSDAFAKDAILAWFRGEFAAANAIIDALCGHLASIAAASSDYEATFAAIHHRRINWIPIIQMQKYHSIADVALELRKVADRKTEAEGARKSESNSGGEQKLEKEIVETGGNEGDEAAPEYDSPDSEITDSGSQEMQPSALNNNICSNHEECEGRSSKIKLTKGFSAKESVKGHMVNVVKGLKLYEDVFSESEIFKLTDFVNDIHAAGQNGELSGETFILFNKQMKGNKRELIQLGVPIFGQIKDDTKSNIEPIPALIHDVIDHLIQWKLIPEYKRPNGCIINFFEEGEFSQPFLKPPHLDQPLSTLLLSESTMAFGRILVSENDGNYKGPLMLSLKEGSLIVMRGNSADMARHVMCPSPNRRVSMSFFRVRPDSNQCLSPTPAMTTAVTLWQSGIANPYTLSNGYEAMDMMPNWGIFGAPIVMLPPMRPVATNSRKLPRGGTGVFLPWKGTSRKHTRHLPPRAQKGRLMELPSPVESHLGESTSEPTIAVEG 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01928 512 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 26 493 IPR044842 GO:0003729|GO:0006402|GO:0032451
Viun1g01928 512 MobiDBLite consensus disorder prediction 101 158 - -
Viun1g01928 512 SUPERFAMILY Clavaminate synthase-like 191 390 - -
Viun1g01928 512 MobiDBLite consensus disorder prediction 464 512 - -
Viun1g01928 512 Gene3D - 184 397 IPR037151 -
Viun1g01928 512 MobiDBLite consensus disorder prediction 101 130 - -
Viun1g01928 512 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 295 392 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01928 Viun-Chr1 30764233 30770957 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01928 K10767 - gmx:100796344 901.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01928 1 30764233 30770957 Viun1g01928 1 30764233 30770957 ECH
Viun1g01928 1 30764233 30770957 Viun7g01625 7 21011610 21017089 PCT