Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun1g01927 ATGAATTTCTTCGCATCCGTTTTCTCCGACTCCGACAATGCACACCAAAACGAATCCCAAGAGGAAGCGAATCGCGATTCCTCACTGCTGGAGCGCCGATCTGATTCCACCGGCGCCGGTGCGTGGGAAATCGGCGGTCTGTGGAAAAGGCTGAGCGCGAAATCAGAATTGATCATTGAGACCTACCGTCGCGACCTGCAAGAATTCGGCACCGGCTTGAAGAAAGAGATTGAGGTGGCTCAGGGTTCTCTCGAGACGGTGGGCCACGTCGTCGACCAGTTCGGGAACAGCGTTGCGAAAGGCACCGCTCGCTTTATATCTCACGGCAAGGACGCCATCCCCGTCAATTCCGGGTCCGAAAATAATGTTAATACCAAAAACAAGCACTGTACAGAAAAAGAGGGCTTCAATTCGAGGCGCTATAGTAGGTTCGAGGCTCAAGTTCAGGCCATTCAAGGTGACGTTAGTACTTACAGCGAAGTGGCTGAGGATTTAGAGGGGTATGAGAAGTGGAAATCGGGGTTTTCGTTGGAGGGGAAGAGTGAAGAAATGGAAGGGTTGCTGAGAGAGAATGAGGGTATGGAGAGTGTTTACAAGAGGGTTGTGCCTAATGTCGTTGACCGTGATACGTTTTGGTTTAGGTATTATTATAGAGTTTATAGGTTTAAGAAAGCTGAGGATATGAGGGCTAGGCTCGTGAGGAGAATGTCGAGGGAGGAGGAGGAGTTGAGTTGGGATGTTGAAGATGATGATGATGATGAGCACAGTGACGAAAATAATAAGCGGAAAGAAGAAAATTCTAGTGGAACAGAGAAATCGACTGTGGAACAAATGTATAAATCTTTTGAGGATGGGTCTAAGGAAGGAAAGAGAGGTGATTTATTGCATAGAAGGGGAAGTGGTGATAAGAAGGATGAGCCTGTTGGAGAATCAAAGGTTGACAAGAGTAGCAAGGAAATGGGTGATGGAAGCAAGAAAAAAGAGGATGCAGTGGATGACACTGTTAACATGAATGATTGTGCTGTAGATTCTGATAAGAAAATGGTCATGGAACAGACGATTGATAATGGAAAAGATTCATCGGTTGAGAAGGAGGAGTACCTTGAGTGGGATGAGATTGAGGATCTTAGTGGAATTGATGAAGAGAAGGCAACTCAAACAGGGAGCCCAACCAAAGTTGATTTGCGGAAGCGCCTCAGTACTGCACAACAACAACAACAAGAAGAAGACTTAAGTTGGGATATTGAAGATGATGATGATGATAAGCCTCCTAATGCTAAGGTTTGA 1287 0.4608 MNFFASVFSDSDNAHQNESQEEANRDSSLLERRSDSTGAGAWEIGGLWKRLSAKSELIIETYRRDLQEFGTGLKKEIEVAQGSLETVGHVVDQFGNSVAKGTARFISHGKDAIPVNSGSENNVNTKNKHCTEKEGFNSRRYSRFEAQVQAIQGDVSTYSEVAEDLEGYEKWKSGFSLEGKSEEMEGLLRENEGMESVYKRVVPNVVDRDTFWFRYYYRVYRFKKAEDMRARLVRRMSREEEELSWDVEDDDDDEHSDENNKRKEENSSGTEKSTVEQMYKSFEDGSKEGKRGDLLHRRGSGDKKDEPVGESKVDKSSKEMGDGSKKKEDAVDDTVNMNDCAVDSDKKMVMEQTIDNGKDSSVEKEEYLEWDEIEDLSGIDEEKATQTGSPTKVDLRKRLSTAQQQQQEEDLSWDIEDDDDDKPPNAKV 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun1g01927 428 Gene3D BSD domain 132 235 IPR035925 -
Viun1g01927 428 ProSiteProfiles BSD domain profile. 171 223 IPR005607 -
Viun1g01927 428 Coils Coil 222 242 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 15 32 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 344 365 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 240 428 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 8 35 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 382 409 - -
Viun1g01927 428 SMART wurzfinal6 171 223 IPR005607 -
Viun1g01927 428 MobiDBLite consensus disorder prediction 256 270 - -
Viun1g01927 428 Pfam BSD domain 171 227 IPR005607 -
Viun1g01927 428 Coils Coil 177 197 - -
Viun1g01927 428 MobiDBLite consensus disorder prediction 277 334 - -
Viun1g01927 428 SUPERFAMILY BSD domain-like 141 229 IPR035925 -
Viun1g01927 428 PANTHER SYNAPSE-ASSOCIATED PROTEIN 11 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun1g01927 Viun-Chr1 30761864 30763571 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun1g01927 - - pvu:PHAVU_001G147700g 603.208
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun1g01927 1 30761864 30763571 Viun1g01927 1 30761864 30763571 ECH
Viun1g01927 1 30761864 30763571 Viun7g01626 7 21017804 21019485 PCT