Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02398 ATGGCTGTTCATACACCTCCAAGTTCATGTTTTGGAGCTAAGAAGTATCAGGCTCTAGCACCATTGAGAATTTTAAGGGGTCTGGTGTGTCTACTGGTTCTGCTTTCAACAGCATTTATAATGTTAGTGTTCTTTGGCTTTATAAGTGCTGTTATAGTTCGACTTCTTAGTGTCCGTTACAGCAGGAGAGCAACTTCCTTTTTCTTTGGTGCTTGGCTTGCCTTGTGGCCCTTTCTGTTTGAAAAGATCAACAAGACTAAGGTTGTGTTTTCTGGAGACGATGTTCCTTGTAGAGAACGGATCTTACTGATCGCGAATCATAGAACCGAGGTTGATTGGATGTATTTATGGGACCTTGCCTTGAGGAAGGGATGCCTTGGATACATAAAATATATACTTAAGAGCAGCTTGATGAGACTTCCAGTTTTTGGTTGGTCATTTCACATACTAGAGTTCATCCCAGTGGAAAGAAAGTGGGAGGCAGATGAATCAATCATGCGCCATATGCTTTCAACATTCAAGAATCCACAAGATCCTCTCTGGCTTGCTCTTTTCCCAGAAGGCACTGATTTTACTGACCAAAAGTGCCTTCGGAGTCAAAAATATGCTGCTGAACATGGGTTACCAGTTCTGAAAAATGTTCTACTTCCAAAGACAAAGGGCTTCTGCGCCTGCTTGCAAGAGTTGAGGGAATCTCTCACTGCAGTTTATGATGTTACCATTGGCTACAAAAACCGCTGCCCTTCTTTCTTGGACAATGTCTTTGGGGTGGATCCTTCTGAAGTTCATATACATATTCACCGCATCCCCATCGATACTATCCCAGAATCTGAAACTGAAATGTCCACTTGGTTGATAAATAGATTCCAGTTGAAGGACCAGTTGCTTTCAAAATTTCAAGTCCAAGGTCAGTTTCCTGATCCAGCAACACAAAGGGACCTGTCTAGTGTGAAGAGCATTTTGAACTGTATGACAATTGTTGCCGTGACAGGCACATGCATGTACTACAGTTTTTCCTCTGTCTGGTTTAAACTTTATGTGTCTCTAGTCTGTGCTTATTTGGTTCCAGCCACCTATTTCAATATTCGGCCACAGCCCATTCTTAGCCTCTTGAAGATGAGATCAAGTTGCCACCTTTCAAATACATGA 1149 0.4221 MAVHTPPSSCFGAKKYQALAPLRILRGLVCLLVLLSTAFIMLVFFGFISAVIVRLLSVRYSRRATSFFFGAWLALWPFLFEKINKTKVVFSGDDVPCRERILLIANHRTEVDWMYLWDLALRKGCLGYIKYILKSSLMRLPVFGWSFHILEFIPVERKWEADESIMRHMLSTFKNPQDPLWLALFPEGTDFTDQKCLRSQKYAAEHGLPVLKNVLLPKTKGFCACLQELRESLTAVYDVTIGYKNRCPSFLDNVFGVDPSEVHIHIHRIPIDTIPESETEMSTWLINRFQLKDQLLSKFQVQGQFPDPATQRDLSSVKSILNCMTIVAVTGTCMYYSFSSVWFKLYVSLVCAYLVPATYFNIRPQPILSLLKMRSSCHLSNT 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02398 382 CDD LPLAT_LCLAT1-like 77 267 - -
Viun11g02398 382 SMART plsc_2 101 215 IPR002123 GO:0016746
Viun11g02398 382 Pfam Acyltransferase C-terminus 255 324 IPR032098 -
Viun11g02398 382 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 30 263 - -
Viun11g02398 382 PANTHER 1-ACYLGLYCEROL-3-PHOSPHATE ACYLTRANSFERASE-RELATED 19 356 - -
Viun11g02398 382 Pfam Acyltransferase 91 244 IPR002123 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02398 Viun-Chr11 37813449 37817062 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g02398 15 366 Miscellaneous Gene Families AT1G75020 61.190 1.25e-161 456
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02398 K13513 - gmx:100814885 664.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g02398 11 37813449 37817062 Viun11g02398 11 37813449 37817062 ECH
Viun11g02398 11 37813449 37817062 Viun3g03829 3 45571310 45573729 ECH