Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g02219 ATGAAGGCTTTCTTGTTTCTGTTTGTGGCCCTTACTTTGTGCGGCTATGGTGTTTGTAAAGAATGCACAAACGTTCCAACGCAATCACATACATTCCGATACGAGTTATTGGCATCGAAGAATGCAACATGGAGAGAGGAAGTGATGTCTCACTACCACTTGACTCCGACGGACGAAACTGCTTGGGCTGATTTGCTTCCGAGGAAGTTCTTGACAGAACAGAACCAGCATGATTGGGGGATGATGTACAGGAAAATTAAGAACATGGGTGTGTCGAAATCCCCAGAAGGATTTCTTAAAGAAGTGGCTCTTGAAGATGTGAAGTTGGATAAGGATTCGATCCATGGCATAGCTCAGCAGACAAATTTGGAGTATCTGTTGATGTTAGATGTTGACAAATTGCTTTGGAGCTTCAGGAAGACAGCTGGTCTGTCCACTCCTGACACCCCTTATGGAGGGTGGGAAGGTCCTGAAGTTGAGCTTCGCGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTGATGTGGGCTAGCACACAGGATGATAGCCTGAAGCAGAAAATGTCATCTGTTGTTGCTGGCCTATCTGCTTGTCAGGAAAAAATAGGGACTGGATATCTATCTGCATTTCCTTCTGAGTTGTTTGATCGATTTGAATCTGTTCAACCTGTTTGGGCTCCCTATTATACCATTCACAAGATTTTAGCTGGCCTCTTGGATCAGCACACATTTGCTAGAAACCCTCAAGCTCTAAAAATGGTGACATGGATGGTGGACTACTTCTACAATAGGGTACAGAATGTAATAACAAAGTCCACTATAAATAGGCACTATCAATCGCTAAACGAGGAAACAGGAGGAATGAATGATGTACTTTACAGATTATACAGCATAACAGGAGATTCTAAACATCTATTGTTGGCTCACCTTTTTGACAAGCCGTGCTTTTTAGGGTTGCTTGCAGTGCAGGCCAACGACATAGCTGATTTTCATGCTAACACACATATACCAGTTGTTGTTGGATCTCAAATGCGATATGAAATCACAGGCGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGAACTCGTAAACTCTTCTCACAGCTACGCAACTGGAGGGACATCAGTCAGCGAGTTTTGGAGTAATCCAAAGAGAATAGCAGACAACTTAAGAACAACAGAGAATGAAGAGTCATGCACGACTTATAATATGTTGAAGGTTTCACGCCACCTCTTTAAATGGACCAGAGAAGTCTCTTATGCAGACTACTATGAGCGTGCTTTAACTAATGGAGTTCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTACATGCTTCCACTTGGTATTGGAGTTTCCAAGGCTAGAACTGGACACAGTTGGGGAACACCGTTTGACTCTTTCTGGTGCTGCTACGGAACTGGAATTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTTGAAGAGGAGGGGAAAGGTCCTTCACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAATCTTGCTCAATCAAACAGTTGTTCCAGTTTCTTCATGGGATCCTTACCTACGAGTGACGTTTACGTCATCTCCTGTTGAGAGTGCTTCGTCTACACTGAACTTTCGACTACCAAGTTGGACTAGTACAGATGGTGCCAAGGGGATATTAAATGGTGAATCTTTGTCGCTGCCAAATCCAGGATCTTTTTTGTCAATCACAAGACAATGGAGTGCTAGTGACAAGCTCACCCTTCAGCTGCCCCTTACCGTAAGAACAGAGGCCATAAAAGATGACAGGCCTCAATATGCATCTGTTAAAGCTATTCTTTATGGTCCTTATCTTCTTGCCGGTCATATAAGTGGTGGTGATTGGGACAACCTTAAAATTGAAGCTAAGGATACAGACTGGATCACTCCTGTTCCTGCCAGTTATAATAGCCAACTAGTTTCTTTTTTCCAAGATTTTGAAAAATCGACTTTTGTGTTGGCAAATTCAAACCAATCATTTGCAATGCAAAAGGTACCTGAATCTGGCACTGATTTGGCTCTTAAGGCAACCTTTAGGCTTGTCCTAAAAGAATCTTCCTCAAAGTTTTCAACATTAGCAGATGCTAATGAAAGATCAGTGATGTTAGAACCGTTTGATCTTCCTGGAATGAATGTGGTTCACCAAGGAGCAGATAAACCTCTTCTCATTCAAGATTCTTCCAATGGCAAGCCATCTTCTGTTTTTCTTGTGGTACCAGGATTGGATGGAAGAAATGAAACCATTTCTTTGGAATCACAGAGTGACAAGGGTTGCTATGTTTATAGTGGTTTGAGCTCTAATGCAGGTGTCAAGCTCAGTTGCAAATCTGATTCTGATTCTTCTTTTAAGCAAGCAACAAGCTTTGTTCCTAGGGAAGGATTGAGCCAATACCATCCTATCAGTTTTGTGGCTAAAGGGGTTAGTAGGAATTTTCTTTTGCAGCCATTACTCTCCTTCAGAGATGAGCCTTATACAGTATATTTCAACATTCAAGATTGA 2562 0.418 MKAFLFLFVALTLCGYGVCKECTNVPTQSHTFRYELLASKNATWREEVMSHYHLTPTDETAWADLLPRKFLTEQNQHDWGMMYRKIKNMGVSKSPEGFLKEVALEDVKLDKDSIHGIAQQTNLEYLLMLDVDKLLWSFRKTAGLSTPDTPYGGWEGPEVELRGHFVGHYLSASALMWASTQDDSLKQKMSSVVAGLSACQEKIGTGYLSAFPSELFDRFESVQPVWAPYYTIHKILAGLLDQHTFARNPQALKMVTWMVDYFYNRVQNVITKSTINRHYQSLNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPVVVGSQMRYEITGDPLYKEIGTFFMELVNSSHSYATGGTSVSEFWSNPKRIADNLRTTENEESCTTYNMLKVSRHLFKWTREVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGIGVSKARTGHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKGPSLYIIQYISSSFNWKSGKILLNQTVVPVSSWDPYLRVTFTSSPVESASSTLNFRLPSWTSTDGAKGILNGESLSLPNPGSFLSITRQWSASDKLTLQLPLTVRTEAIKDDRPQYASVKAILYGPYLLAGHISGGDWDNLKIEAKDTDWITPVPASYNSQLVSFFQDFEKSTFVLANSNQSFAMQKVPESGTDLALKATFRLVLKESSSKFSTLADANERSVMLEPFDLPGMNVVHQGADKPLLIQDSSNGKPSSVFLVVPGLDGRNETISLESQSDKGCYVYSGLSSNAGVKLSCKSDSDSSFKQATSFVPREGLSQYHPISFVAKGVSRNFLLQPLLSFRDEPYTVYFNIQD 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g02219 853 Pfam Beta-L-arabinofuranosidase, GH127 107 628 IPR012878 -
Viun11g02219 853 SUPERFAMILY AbfB domain 747 833 IPR036195 GO:0046373|GO:0046556
Viun11g02219 853 PANTHER PROLINE-TRNA LIGASE (DUF1680) 18 851 - -
Viun11g02219 853 Gene3D - 713 838 - -
Viun11g02219 853 SUPERFAMILY Six-hairpin glycosidases 163 438 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g02219 Viun-Chr11 36982611 36989896 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g02219 K09955 - gmx:100781521 1530.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03624 5 45595347 45602813 Viun11g02219 11 36982611 36989896 PCT