Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01716 ATGACCGAGGTGCTTCATTTCTCTTCTTCTTCGTCGCCAACCGCTTCTTCCTCTGACGGCATTCTGGTTGTCTCCGCCGAGCAAGAACCGGCGCCACCCTCGTCTGCGGTGGTGGAAGGGTTTGCCACGGTCACCGACTGTGAGGCGCGCGGGGTCACAGACAGAACGCAGCAGGAACTGTCGCTGCTGGCCATTCTTGTGACCCTTTTGAGGAAATCGTTGATTGCTTGCAAGAGTGAGGGGAGAGGTGACCTCTGCACCATGGAGATTAGTTGGCCTACTAACGTGCGCCATGTTGCGCATGTCACCTTCGACAGGTTCAATGGCTTCTTGGGCTTGCCACGTGAGTTCGAACCAGAAGTCTCCACAAGGTCTCCCAGTGCTAGTGCCACTGTTTTTGGAGTTTCAACAGAATCCATGCAGTTATCATATGACACGAGAGGGAACAGTGTTCCAACCATACTTCTACTAATGCAAAGGCACTTGTATGCTCTCGGAGGGTTGCAGGCAGAGGGGATTTTCAGAATTAATGCAGACAATACTCAAGAAGAGAATGTTAGGGATCAATTGAACAGGGGATTGGTCCCAGAAGATGTTGATATACATTGTTTAGCTGGACTGATTAAGGCTTGGTTTAGGGAACTGCCTAGTGGTGTTCTGGATTCTTTATCACCAGAGCATGTAATGCAATGCCAGACCGAAGATGATTGTGCAGAACTGGTTAGTCAGCTTCCTCACACTGAAGCTTCCCTCTTGGACTGGGCTATTAATCTGATGGCTGATGTTGTTCAAGAGGAACGTCTGAATAAGATGAATGCACGCAACATCGCAATGGTTTTTGCACCAAACATGACTCATATGGCAGACCCTTTGACTGCATTGATGTATGCAGTTCAAGTGATGAACTTTCTGAAGACACTTGTGTTAAGGACACTGCGAGAGAGAAAGGATTGTGTGGTAGAATCGTTTCCTGGGTTTTGTTTAGAGCCCTCTGATGAGAATGGAGATCACAGTCTTTTGGAGTCCTGCCAGCAAGATGATGTTGGCACTGAAAGTGAAGAGTCTGGAGAAACCTTTGTTTCTGAGACAAATGTATCAGAATGTTCCTCTGAATCTCTCCAAAACAAATATTCAACTATAGGAGAATGTGGCAGTTTTATAGGCTCTTCTGAGAATCTGGATTTTGAGGAGGAACTGCATTGTGAGTTTCCAACCAAAGGAAACCTTGGAAAGAGTAAGAGTGGACAATCAAGTGATTCCATTGCTAAAAAGGGGTCCAAAAAAACCGGAGGTCTGCAACAACCTGTGATCAATGCAACAGTGTCTGCTGAGAAAAAGGGTATCAGTAATCTGAGCCGCATAGATTCAAGATCAGAGCGAATAGAAGCCTGGCGGTGA 1398 0.4678 MTEVLHFSSSSSPTASSSDGILVVSAEQEPAPPSSAVVEGFATVTDCEARGVTDRTQQELSLLAILVTLLRKSLIACKSEGRGDLCTMEISWPTNVRHVAHVTFDRFNGFLGLPREFEPEVSTRSPSASATVFGVSTESMQLSYDTRGNSVPTILLLMQRHLYALGGLQAEGIFRINADNTQEENVRDQLNRGLVPEDVDIHCLAGLIKAWFRELPSGVLDSLSPEHVMQCQTEDDCAELVSQLPHTEASLLDWAINLMADVVQEERLNKMNARNIAMVFAPNMTHMADPLTALMYAVQVMNFLKTLVLRTLRERKDCVVESFPGFCLEPSDENGDHSLLESCQQDDVGTESEESGETFVSETNVSECSSESLQNKYSTIGECGSFIGSSENLDFEEELHCEFPTKGNLGKSKSGQSSDSIAKKGSKKTGGLQQPVINATVSAEKKGISNLSRIDSRSERIEAWR 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01716 465 MobiDBLite consensus disorder prediction 409 424 - -
Viun11g01716 465 ProSiteProfiles Rho GTPase-activating proteins domain profile. 135 320 IPR000198 GO:0007165
Viun11g01716 465 SMART PBD_5 90 124 IPR000095 -
Viun11g01716 465 Pfam P21-Rho-binding domain 89 116 IPR000095 -
Viun11g01716 465 Gene3D Rho GTPase activation protein 122 316 IPR008936 -
Viun11g01716 465 Gene3D CRIB domain 87 121 IPR036936 -
Viun11g01716 465 CDD CRIB 88 128 - -
Viun11g01716 465 SMART RhoGAP_3 149 309 IPR000198 GO:0007165
Viun11g01716 465 MobiDBLite consensus disorder prediction 406 440 - -
Viun11g01716 465 SUPERFAMILY GTPase activation domain, GAP 130 308 IPR008936 -
Viun11g01716 465 Pfam RhoGAP domain 152 286 IPR000198 GO:0007165
Viun11g01716 465 ProSiteProfiles CRIB domain profile. 90 103 IPR000095 -
Viun11g01716 465 FunFam Rho GTPase-activating protein 5 120 313 - -
Viun11g01716 465 CDD RhoGAP 152 307 - -
Viun11g01716 465 PANTHER MKIAA1688 PROTEIN 1 428 IPR044785 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01716 Viun-Chr11 33334078 33337536 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01716 - K20642 gmx:100784019 755.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01716 11 33334078 33337536 Viun11g01716 11 33334078 33337536 ECH
Viun5g03205 5 42882730 42886196 Viun11g01716 11 33334078 33337536 PCT