Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun11g01039 ATGTTGCTGCAGATATCACCAAGTTTGAGGCATGTCACTGTGCTTCCGGGAAAAGGGTTGAAGGAATTTATCAAAGTGAAGGTTGCATCAAGGAGGCTATCTTATCGGATGCTCATCTATTCACTCTTGTTCTTCACATTCCTTCTTAGGTTTGTGTTTGTTCTCACAGCAGTGGATAACATTGATGGAGAAAACAAGTGTTCTTCCATAGGTTGCCTGGGAAAAAAATTGAGGCCAAAGATTTTGGGAAGAAGTCTTGAATCAAATGTCCCAGAAGTAATATACAGAATATTAGATCAACCCCTTGGAAAAGATGAATTAGAGCAAAAGACTGATATACCTCAGACTTTGGAAGAGTTCATGGTCCAAACAAAGGAAGGTGGATATGATGCCAAGACATTTGCAATTAAACTAAGAGAAATGGTGACCCTTATGCAACAAAGAACCAGAGAAGCCAAAGTCCAAGAGTACCTATACCGTCATGTAGCATCAAGCAGCATACCAAAACAGCTTCATTGCCTTGGCTTGAAGCTAGCCAATGAGCACACAAACAATGCAGGTGCACGCCTTCAGCTACCCTCTGCAGAACTTGTCCCTGCTCTTGTTGACAACAACTACTTTCACTTTGTACTTGCCTCCGACAATGTGCTCGCTGCGTCTGTGGTTGCAACATCACTTGTACGCAACAGTTTGAGACCTCAGAAGGTTGTTCTGCACATAATTACAGACAGAAAAACTTACTATCCCATGCAGGCTTGGTTCTCCTTGCACCCTTTATCACCTGCCATAATCGAGGTCAAGGCACTGCACCACTTCGATTGGTTTTCAAAGGGAAAGGTGCCTGTGCTGGAAGCAATGGAAAAAGATCAAAATGTAAGATCGAAGTTCAGAGGAGGATCATCAGCTATTGTTGCAAATACCACTGAGAAGCCTAGAGAAATTGCAGCAAAGCTGCAAGCACTTAGCCCTAAGTATAACTCAGTAATGAATCACATTCGCATACATCTTCCAGAGCTTTTCTCTAGTCTTAGCAAGGTGGTCTTCCTTGATGATGACATTGTGGTACAAACTGATCTTTCACCTCTTTGGGACATTGACATGGATGGAAAAGTGAATGGAGCAGTAGAAACATGCAGTGGAGAAGATAAGTATGTTATGTCAAAGAGGTTGAAAAGCTATTTGAACTTTTCACACCCTTTAATATCCCAAAATTTTGATCCCAATGAATGTGCTTGGGCTTATGGCATGAACATTTTCGACCTTGATGCTTGGAGAAAGACCAATATAAGCTCTACATACCATTACTGGGTTGAGCAGAATATAAAATCAGATCTCAGTTTGTGGCAGCTAGGGACATTACCACCTGGATTAATAGCATTCCATGGTCATGTCCACACTATTGATCCTTTCTGGCACATGCTGGGATTGGGATATCAGGAAAGTACAAGTTTTAGTGATGCTAAGGATGCTGGTGTTATCCATTTCAATGGCAGGGCAAAGCCATGGCTAGATATAGCTTTTCCCCATCTAAGGCCACTGTGGACTAAATACATTGATTTCTCAGATTACTTCATAAAGAGCTGCCATATCAAGGCATTGTAA 1602 0.4176 MLLQISPSLRHVTVLPGKGLKEFIKVKVASRRLSYRMLIYSLLFFTFLLRFVFVLTAVDNIDGENKCSSIGCLGKKLRPKILGRSLESNVPEVIYRILDQPLGKDELEQKTDIPQTLEEFMVQTKEGGYDAKTFAIKLREMVTLMQQRTREAKVQEYLYRHVASSSIPKQLHCLGLKLANEHTNNAGARLQLPSAELVPALVDNNYFHFVLASDNVLAASVVATSLVRNSLRPQKVVLHIITDRKTYYPMQAWFSLHPLSPAIIEVKALHHFDWFSKGKVPVLEAMEKDQNVRSKFRGGSSAIVANTTEKPREIAAKLQALSPKYNSVMNHIRIHLPELFSSLSKVVFLDDDIVVQTDLSPLWDIDMDGKVNGAVETCSGEDKYVMSKRLKSYLNFSHPLISQNFDPNECAWAYGMNIFDLDAWRKTNISSTYHYWVEQNIKSDLSLWQLGTLPPGLIAFHGHVHTIDPFWHMLGLGYQESTSFSDAKDAGVIHFNGRAKPWLDIAFPHLRPLWTKYIDFSDYFIKSCHIKAL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun11g01039 533 CDD GT8_like_1 207 519 - -
Viun11g01039 533 Pfam Glycosyl transferase family 8 203 506 IPR002495 GO:0016757
Viun11g01039 533 PANTHER GALACTURONOSYLTRANSFERASE 4-RELATED 82 530 IPR029993 GO:0047262
Viun11g01039 533 SUPERFAMILY Nucleotide-diphospho-sugar transferases 208 530 IPR029044 -
Viun11g01039 533 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 209 524 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun11g01039 Viun-Chr11 22503250 22506405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun11g01039 1 532 Glycosyltransferase AT5G54690 78.652 0.0 868
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun11g01039 K20867 - gmx:100777811 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun11g01039 11 22503250 22506405 Viun11g01039 11 22503250 22506405 ECH
Viun5g02771 5 39212811 39215725 Viun11g01039 11 22503250 22506405 PCT