LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun10g02776	ATGGATTCAAATAATTGGAGACCTAATCAAGGTAATAATCCCACTATGGATACAAACGATTGGAGAGCTCAACTACCACCTGATTCACGCCAAAGAATTGTCAACAAAATAATGGACACATTAAAAAAACACCTTCCTCTTTCTGGTCATGACGGAATGAATGAACTACGGAAGATTGCTACAAGGTTTGAAGAAAAGATTTTTACTGCTGCAACAAGCCAGCCTGATTATCTACGGAAAATATCTATGAAGATGCTTACAATGGAGACTAAATCCCAAAACACCCTGGCTAACAATCAAGTTGGCACTAGCAATAAACCTACAGATCAAGGACTTGTTTTGCAGCCTCAAGTTCATAATCTTGGGCAACAACATTCTGTTCCTTTGCCTAGTCAGATGCAGTCACATCAGCAGCTTCTATCTCAAAATGTTCAAAATAATGTTGCATCGCAACCTAACCTTCCACCTGTATCTAGTCTAGCCCAGACTCCCAGCCAAAATATTGTCCAGAACTCTAACGTACAGAATATACCTGGGCCAAATTCAGTTGGAAGCACTATTAGCCAAAATTCCAACTTACAGAGTATGTTTCCTGGTTCTCAGAGAACAATGCCAGGAAGGCAGCAGGTTGGTCCCCCACAACAACAGCTGCAATCACAGAATCCACAGCAATTTCTTTACCACCAGCAGCAGTTACTGAAGCAGAAGCTCCAGCTTCATTCTCAGATACAGCAGCAGCAACAACAGCAAAGCCTTATGCAACCAAATCAGTTGCAATCTTCTCATCAATCTACTAGTGTTCAACAGTCAATGCAGTCAATGCCTCAGCAACATTCACAAGTTATGAGGCATCAACAACAGACTTCTATGGTACATCAACAACAAACACCAGTCACTCAACAGACAATCTTACCCTCACAACAGCAACAACTTATGGGACCTCAGTCAAATACAACAAACATGCAACATTCCCAAATGCTTGGGCAACAGAACAATGTTGGTGATATACAGAAATCTCAGAGGATGCTTTCACAACAAAGTAATCTTACAAGCCTGCAACAGCGACAACAGTTAATAAATCAGCAAAACAACCCAGCAAATGTACATCAACAACAATTGGGAAATAATGGCCCTGGGTTACAGCAGCAGCATTTGCTTGGACCTGACTCTGGCAATGCAGACATGCACACAAGTCATCACTCTGCACACATGCTGCAACAACCAAAGGTTCCAATGCAGCAACAATCACAACAAAATTCGTCAAATTTGTTGTTACCTCATTCACAGCAGTCACAGCCACTGGGTTCACAACAGCAATTAATGTCTCAGATTCACACTCAGCCCACACAGTTGCAACAGCAATTGGGCTTGCAGCAGCAGCAGCAGCCAAATCCCTCACAACGTGATATGCAGCAAAGAATTCAAACATCAGGATCCTTACTTCAACAACAAAATGTTCTTGATCATCAAAAACAGTTGTATCAATCTCAAAGAAATCTTTCAGAAACATCAGCAACTTCTCTGGACTCTACAACACAGTCTGCACAACCTAGTGGAAATGATTGGCAAGAAGAAGTTTACCAGAAGCTCCAAGCCATGAAAGAAAGTTATTTGCCAGATATGAATGAATTGTACCAAAAAATTGCTAATAAACTTCAGCAGCATGATTCTCTTCCCCAACAGTCCAAACCAGATCAGCTTGATAAGATGAGGGCATATAAAATGATGTTGGAGAATATGATGACATTCGTACAGATTCCCAAGATCAGCATTTTGCCTCACTACAAGGAGAAATTGGTACCATATGAGAAGCAGATTGTAGGTCTCCTAAATCAAAGTAGACCCAGGAAAGGACAGATTCCCCAAACCCATATGTCCTCCATGCAACAGCCCCAATCCCAAGTTACGCAATTACAGTCTCATGAAAATCAAATGAACTCTCAGCTGCAGTCAACAAATTTACAAGGTTCTGTGCCAACCATGCAGCAGAATAATATTGCAACCTCTCAGCACAATCCTTTGTCGGGTGTATCAGCAGGACAGCAGAATATGATGAATTCGATGCAACCTGGAACTAGTTTAGATTCTGGACAAGGAAATTCTGTGAACTCCCTTCAACATGTTCCAATGAACTCCATGCAACAAACTCCTGTCAGTACTCCTCAACTACAGACTAACATTAATTCCTTACAATCACAAGGTGGGGCAAATGTCAGTCAACCAAATTCCCTTCACTCAGGTTCCAGTGCACTTCAACACCAACTGAAACATCAGGAACAGCAGATGCTGCAGAATCAGCAATACAAACAATATCATCAGCAGCGAATGTTGCAGAGGCAGCTCCTTCAGCAGCAGCAACTACACCATCCAGCGAAGCCACAGCTATCTGCACAATTGCAAACACATCAAATGTCCCAGCTTCACCAAATGAATGATATAAATGACTTAAAAATGCGACAAGGAATTGGTGTTAAGCCAGGGGTCTTTCAACAACATCTTACATCAGGTCAACACTCAGCATATTCCCATCAACAGCTGAAACAAGGGAATGCATTTCCTGTTTCTTCACCCCAACACCTTCAGGCTCCATCTCCGCAGATTCAGCAACATTCATCTCCCCAGGTTGAGCAACAAAATCATCTCCCGTCTAAAACTAAAGTTGCAACTCCTCTGCAATCTTCTAATTCACCCTTTGTAGGACCTACCCCTTCACCTCCTTTGGCTCCATCTCCTATGCCAGGGGAATCTGAGAAGTCCATTCCCTGTGTTTCATCAATATCGAATGCCACAAATATTGGACATCAACAAACAGGGGGTGCAGTAGGACCACCTCAATCCCTTGCCATTGGGACTCCTGGGATTTCAGCGTCTCCTTTATTGGCAGAATTCAGTGGTCCGGATGGTGCGTATGGCAATGCTTTAGCTGCCACTTCTGGGAAGTCAACTGTTACAGAGCAGCCTCTTGAACGCCTAATTAATGTGGTAAAATCAATGTCATCTAAAGCATTGAGTGCTGCTGTCAGTGATATTGGTTCAGTTGTCAGCATGAATGATAGAATAGCAGGATCAGCTCCAGGTAACGGATCCAGAGCAGCTGTTGGTGAAGATTTGGTTTCCATGACTAATTGTCGCCTTCAGGCTCGAAATTTCATTACCCAAGATGGTACCAATGGAATTAAGAGGATGAAACGTTACACAAGTGCTATACCCTTGAATGGTGTATTATCTGCTGGTAGCATGAATGATAGCATCAAGCAGTTAACTGCTTCGGAGGCTTCTGATCTAGAGTCAACAGCAACATCCAGTGTCAAGAAACGGAAAATCGAGGTTAACCATGCCCTTTTGGAAGAAATAAGGGAGATTAATCACCAACTTATCGACACAGTAGTAGACATAAGCAATGTTGATCCAACACCTGCTGTTGCCGCTGATGAAGGAGCAGAAGGAATCCTTGTCAAATGCTCTTTCATTGCTGTGGCTCTCAGCCCTAGCTTAAAATCCCAATATGCTTCAGCGCAGATGTCACCTATTCAACCCCTGCGTTTATTGGTCCCTGCAAATTATCCTAATTGTTCTCCCATACTCCTAGACAAATTTCCAGTTGAATCCAGTAAGGAGAATGAAGATCTTTCGGCGAAGGCAAAGGCAAAGTTTAGCATTTCTTTGCGCAGTTTATCACAACCTATGTCACTTGGGGATATAGCAAGGACTTGGGATGTTTGTGCTCGCAGTGTTATTTCTGAGCATGCCCAACAGAGTGGGGGAGGAAGCTTCAGCTCTAAGTATGGAACTTGGGAGAATTGCTTGACCACAAACTAA	3819	0.4279	MDSNNWRPNQGNNPTMDTNDWRAQLPPDSRQRIVNKIMDTLKKHLPLSGHDGMNELRKIATRFEEKIFTAATSQPDYLRKISMKMLTMETKSQNTLANNQVGTSNKPTDQGLVLQPQVHNLGQQHSVPLPSQMQSHQQLLSQNVQNNVASQPNLPPVSSLAQTPSQNIVQNSNVQNIPGPNSVGSTISQNSNLQSMFPGSQRTMPGRQQVGPPQQQLQSQNPQQFLYHQQQLLKQKLQLHSQIQQQQQQQSLMQPNQLQSSHQSTSVQQSMQSMPQQHSQVMRHQQQTSMVHQQQTPVTQQTILPSQQQQLMGPQSNTTNMQHSQMLGQQNNVGDIQKSQRMLSQQSNLTSLQQRQQLINQQNNPANVHQQQLGNNGPGLQQQHLLGPDSGNADMHTSHHSAHMLQQPKVPMQQQSQQNSSNLLLPHSQQSQPLGSQQQLMSQIHTQPTQLQQQLGLQQQQQPNPSQRDMQQRIQTSGSLLQQQNVLDHQKQLYQSQRNLSETSATSLDSTTQSAQPSGNDWQEEVYQKLQAMKESYLPDMNELYQKIANKLQQHDSLPQQSKPDQLDKMRAYKMMLENMMTFVQIPKISILPHYKEKLVPYEKQIVGLLNQSRPRKGQIPQTHMSSMQQPQSQVTQLQSHENQMNSQLQSTNLQGSVPTMQQNNIATSQHNPLSGVSAGQQNMMNSMQPGTSLDSGQGNSVNSLQHVPMNSMQQTPVSTPQLQTNINSLQSQGGANVSQPNSLHSGSSALQHQLKHQEQQMLQNQQYKQYHQQRMLQRQLLQQQQLHHPAKPQLSAQLQTHQMSQLHQMNDINDLKMRQGIGVKPGVFQQHLTSGQHSAYSHQQLKQGNAFPVSSPQHLQAPSPQIQQHSSPQVEQQNHLPSKTKVATPLQSSNSPFVGPTPSPPLAPSPMPGESEKSIPCVSSISNATNIGHQQTGGAVGPPQSLAIGTPGISASPLLAEFSGPDGAYGNALAATSGKSTVTEQPLERLINVVKSMSSKALSAAVSDIGSVVSMNDRIAGSAPGNGSRAAVGEDLVSMTNCRLQARNFITQDGTNGIKRMKRYTSAIPLNGVLSAGSMNDSIKQLTASEASDLESTATSSVKKRKIEVNHALLEEIREINHQLIDTVVDISNVDPTPAVAADEGAEGILVKCSFIAVALSPSLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDKFPVESSKENEDLSAKAKAKFSISLRSLSQPMSLGDIARTWDVCARSVISEHAQQSGGGSFSSKYGTWENCLTTN	1272

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	171	220	-	-
	Viun10g02776	1272	FunFam	Mediator of RNA polymerase II transcription subunit 15a	20	98	-	-
	Viun10g02776	1272	SUPERFAMILY	Kix domain of CBP (creb binding protein)	18	92	IPR036529	GO:0003712\|GO:0006355
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	731	768	-	-
	Viun10g02776	1272	Pfam	KIX domain	19	98	IPR036546	-
	Viun10g02776	1272	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 15A-RELATED	837	1261	IPR044661	GO:0003713\|GO:0031490
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	782	803	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	851	898	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	248	276	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	1	24	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	851	921	-	-
	Viun10g02776	1272	Gene3D	Coactivator CBP, KIX domain	20	99	IPR036529	GO:0003712\|GO:0006355
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	684	705	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	368	474	-	-
	Viun10g02776	1272	Coils	Coil	229	249	-	-
	Viun10g02776	1272	MobiDBLite	consensus disorder prediction	498	522	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun10g02776	Viun-Chr10	40693433	40707880	Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun10g02776	K14972		-	gmx:100805336	1774.21

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun5g04079	5	48181448	48193146	Viun10g02776	10	40693433	40707880	PCT