Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00143 ATGAAGCTTGTAGCATCCTCTATTTCTCAAGCCAACCCTAATTGTTCATCTTTTGAATCCAACCTAAGCTCACAATTCAACAAGTCTTTACCATCATGGAACCAACTCAAACCTTTCTCAACCAAATGCAACTTTCCCAAACTTACACACAAATGGAAGCAATACCAAGGAATTAACCATTGGGAAGGTTTGTTGGATCCTCTTGATGATAACCTACGTTGGGAAATCTTAAGATATGGTCATTTTGTAGATGCTAGCTATAACTCTTTTGATTTTGACCCAACTTCTCTTACTTATGCCACATCTCTTTATTCAAAAAGATCACTTTTGAAAAAGTGTGGGTTGGAAAATTATGGGTATAAGATATCCAAATATTTATATGTCACATGTGGAATTCATGTGCCAGCTTGCATAAATAAATTTTTCAAAAAGTTGTGTACTCGATCTAGTTTGATTGGCTACATAGCAGTATGTGTAAATGATAAAGAAATTGTTCGACTCGGTCGACGAGACATTATTATTGCTTTTAGAGGAACGGTTACATGTTTGGAGTGGTTGGAAAACTTACGAGTCTCCTTAACACACTTGCCAGGTCTTGTCACAGGAGAAGATGGTGTTGGTCCCATGGTGCAAAAAGGGTTTTTGAGTCTTTACACGTCCAAAACCTCTAAACGTGCAAGCTTGCAAGAGATGATAAGAAAAAAGATTGGAAGAGTGATTCAGAGATACACCAACGAGCCTCTTAGTTTAACCCTAACGGGTCATAGTCTTGGAGCCGCACTCGCGATTTTGAGTGCGAATGATATAACCACCACTTTCAAGAATGCGCCGATGGTTACGGTTATATCATTTGGAGGACCTCGTGTGGGAAATGAGAGTTTTAGGAAGCAGTTAGAGCAAAAAGGAATTAAGATACTACGAATAGTGAACTCTGATGATGTTGTTACAAAAGTTCCGGGGTTTATTGTGAATTTAGATGAATTGGAAAGTAATAAAGATGTTAGTGTGGGAATTTGGTCAAGATGGTTGTACAAGTACACAGAAAACATGCAATTGGTGTATGTTGACATTGGACAAGAGTTAAGACTAAGTAGTAGGGATTTTCCATGCCTCAATAAGAGAGATGTTGCCATGTGTCATGACCTCAAAACATATCTTCATTTGGTCAAAAATTTTGTAAGCTCCTCTTGTGCTTGCAAACACAAAAAGATTCATTCTGTTCAGCCATGA 1230 0.3797 MKLVASSISQANPNCSSFESNLSSQFNKSLPSWNQLKPFSTKCNFPKLTHKWKQYQGINHWEGLLDPLDDNLRWEILRYGHFVDASYNSFDFDPTSLTYATSLYSKRSLLKKCGLENYGYKISKYLYVTCGIHVPACINKFFKKLCTRSSLIGYIAVCVNDKEIVRLGRRDIIIAFRGTVTCLEWLENLRVSLTHLPGLVTGEDGVGPMVQKGFLSLYTSKTSKRASLQEMIRKKIGRVIQRYTNEPLSLTLTGHSLGAALAILSANDITTTFKNAPMVTVISFGGPRVGNESFRKQLEQKGIKILRIVNSDDVVTKVPGFIVNLDELESNKDVSVGIWSRWLYKYTENMQLVYVDIGQELRLSSRDFPCLNKRDVAMCHDLKTYLHLVKNFVSSSCACKHKKIHSVQP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00143 409 CDD Lipase_3 120 327 - -
Viun10g00143 409 Pfam Lipase (class 3) 173 321 IPR002921 GO:0006629
Viun10g00143 409 SUPERFAMILY alpha/beta-Hydrolases 119 365 IPR029058 -
Viun10g00143 409 PANTHER PHOSPHOLIPASE A1-IBETA2, CHLOROPLASTIC 45 402 - -
Viun10g00143 409 Gene3D alpha/beta hydrolase 51 407 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00143 Viun-Chr10 898717 899946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun10g00143 47 401 Acyl Lipid Metabolism Gene Families AT2G44810 57.103 1.91e-147 424
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00143 K16818 - gmx:106798329 684.485
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun10g00143 10 898717 899946 Viun10g00143 10 898717 899946 ECH
Viun10g00143 10 898717 899946 Viun5g00666 5 4088423 4089805 PCT