Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01624 ATGACAATGAGGACAAAGCAAAGTTTTTTGTGTTTTGTATGGATTTTGCTTTGTGGGTCTTGTTTGGGATCGTTTGTGGTGGAGAAGAACAATTTGAAAATCACTTCCCCAAATTCATTGAAAGGTATATATGAATGTGCAATTGGGAATTTTGGGGTCCCCAAGTATGGAGGAACCATGATTGGCTCAGTGGTGTACCCGAAGACCAATCAGAATGGATGTCAACCCTTTGATTCCTCGTTGAGTTCCAAGCCCGGAACCTTCCCCAGCTTTGTTCTTATTGATCGAGGAGAGTGCTACTTCACTTTAAAGGCGTGGAATGCACAGAAAGGTGGAGCAGCGGCCATTCTTGTTGCAGATGATAGGACAGAACCATTGATCACCATGGACACACCTGAAGAAGGAACTGGTTCCAGCAAAGACGATTATATTGAGAAGATCAACATTCCTTCTGCCCTTATCAGCAAATCACTAGGGGATAAAATCAAGAGTTCTCTCTCTAGTGGGGAAATGGTTAATGTGAATCTTGATTGGAGAGAAGCTCTTCCTCACCCTGATGAGAGAGTTGAGTATGAGTTTTGGACAAGTAGCAATGATGAGTGTGGACCAAAGTGTGAAAGTGAAATTAACTTTGTCAAGGGTTTTAAAGGGGCAGCTCAATTACTAGAGCAGAAAGGGTTTGCAAAGTTTACTCCTCACTATATAACTTGGTATTGTCCAGAAGCATTTATATTGAGCGAACAGTGCAAGTCCCAGTGCATAAATAATGGAAGATACTGTGCACCAGATCCTGAGCTAGATTACAAAAGAGGGTATAGTGGTAAAGATGTTGTTATCCAAAACTTACGTCAAGTATGCTTCTTTAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGACTTTTCAATCCGCTGCCCAATGAGAGAGAATAAGTATACTGAAGAATGCTCAGACCAAGTTATTAAATCTCTTGGTATTGATTTGAAGAAAGTTAAAGATTGTGTCGGAGATCCTGATGCAAATGTCGACAACCCTGTTCTCAACAATGAACAGGATTCACAGATTGGTAACGGCGATCGTGGAGATGTTACTATACTACCTACTCTTATTATAAACAACAGACAATATAGAGGTAAGCTATCAAAAGCAGCAGTACTCAAGGCAATATGTTCAGGCTTCCAAGAAACTACTGAGCCATCAATTTGCTTAACTCCAGACATGGAAACTAATGAGTGTTTGCAGAACAATGGTGGTTGTTGGCAGGACGCTGCTGCTAACATTACTGCGTGCAGGGACACTTTCAGAGGAAGAGTATGCGAATGCCCAGTTATACAAAATGTGCAGTTTGTTGGTGATGGATATACCCATTGTGAAGCTACAGGGGCCTTGAGGTGTGCAATCAACAACGGAGGTTGTTGGAAAGAAACCAGAGGTAGCACGACTTTCTCTGCTTGTATTGATGACCACACCAAAGGTTGCAAGTGTCCACCTGGATTCCAGGGAGATGGAGTCAACTCCTGTAAAGACCTGGATGAATGCAAGGAGAAATTGGCCTGCCAGTGCCCAGAATGTCAATGCAAAAATACTTGGGGAAGTTATGAATGCTCATGTACTGATGGTTTGTTCTACACGCGAGAAAATGATATGTGCATTGGAAAATATGCTGCTTCAGTGTCCGGTGGGGGCATCGTTTGGATGGTTATTCTGATATTGGCTGTTGCTGGTGTCGGGGGGTATGCATTTTACAAGTACAGAATCCGGAGATACATGGACTCTGAGATAAGGGCAATTATGGCCCAATATATGCCCTTGGATAATCAACCGGAGACTTCTATTCATACTCAAGGAGATGTCTAG 1875 0.4256 MTMRTKQSFLCFVWILLCGSCLGSFVVEKNNLKITSPNSLKGIYECAIGNFGVPKYGGTMIGSVVYPKTNQNGCQPFDSSLSSKPGTFPSFVLIDRGECYFTLKAWNAQKGGAAAILVADDRTEPLITMDTPEEGTGSSKDDYIEKINIPSALISKSLGDKIKSSLSSGEMVNVNLDWREALPHPDERVEYEFWTSSNDECGPKCESEINFVKGFKGAAQLLEQKGFAKFTPHYITWYCPEAFILSEQCKSQCINNGRYCAPDPELDYKRGYSGKDVVIQNLRQVCFFKVANESGKPWQWWDYVTDFSIRCPMRENKYTEECSDQVIKSLGIDLKKVKDCVGDPDANVDNPVLNNEQDSQIGNGDRGDVTILPTLIINNRQYRGKLSKAAVLKAICSGFQETTEPSICLTPDMETNECLQNNGGCWQDAAANITACRDTFRGRVCECPVIQNVQFVGDGYTHCEATGALRCAINNGGCWKETRGSTTFSACIDDHTKGCKCPPGFQGDGVNSCKDLDECKEKLACQCPECQCKNTWGSYECSCTDGLFYTRENDMCIGKYAASVSGGGIVWMVILILAVAGVGGYAFYKYRIRRYMDSEIRAIMAQYMPLDNQPETSIHTQGDV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01624 624 CDD EGF_CA 515 546 - -
Vimu9g01624 624 Gene3D Laminin 409 456 - -
Vimu9g01624 624 Gene3D - 23 185 - -
Vimu9g01624 624 FunFam vacuolar-sorting receptor 1 408 464 - -
Vimu9g01624 624 FunFam Vacuolar-sorting receptor 1 22 185 - -
Vimu9g01624 624 SUPERFAMILY PA domain 91 171 IPR046450 -
Vimu9g01624 624 Pfam PA domain 62 162 IPR003137 -
Vimu9g01624 624 ProSitePatterns Calcium-binding EGF-like domain signature. 515 541 IPR018097 GO:0005509
Vimu9g01624 624 Gene3D Laminin 470 557 - -
Vimu9g01624 624 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 8 616 - -
Vimu9g01624 624 SMART egfca_6 515 557 IPR001881 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01624 Vimu-Chr9 25452901 25458037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01624 3 621 Miscellaneous Gene Families AT2G30290 66.667 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01624 - - gmx:100815266 1202.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00189 6 2466507 2471657 Vimu9g01624 9 25452901 25458037 PCT