Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00189 TTGCACTTTGAATTTCAGTTTTTCCTGTTCATCCTGATCTTCTTCCTTTTCTTGTGTGGGAAGAAGAAGAAGAAGAAGAAGAAGAAGATGGGCATAAAACTGAGTCTTTTGTTGTGTGTTTGGGGTTTGTTATTGGGGTGTACTGTTGGTAGGTTTGTGGTGGAGAAGAACAGTTTGAGAGTGACTGCTCCCTCATCGTTGAAGGGGACATATGAATGTGCAATTGGAAATTTTGGGGTCCCCATGTATGGAGGAACATTGGTTGGCTCTGTGCTATACCCAAAGGTGAATCAGAAGGGGTGCCTCAACTTCACTGATGTCAATTTTCAGTCCAAGCCAGGAGGGTTCCCCACCTTTCTACTTGTGGATCGTGGAGATTGCTACTTCACTTTGAAGGCATGGAATGCACAGAATGGTGGAGCAGCAGCTGTTCTTGTGGCTGATGACAAGGCAGAAACATTGATCACTATGGACACTCCTGAAGAAGGGAAAGGTACAGATGATGATTACGTGGAAAATATTAGTATTCCTTCTGTTCTTATCAGCAAATCCTTGGGGGATAGCATAAAAAAAGCTCTCTCTGATGGGGAAATGGTTAACATGAATCTTGATTGGAGAGAGGCTCTTCCACATCCTGATGATAGAGTTGAGTATGAGTTATGGACAAATAGCAACGACGAGTGTGGACAAAAGTGTGACAGTCTAATTAATTTTCTGAAGGACTTTAAAGGGGTTGCTCAGCTGCTTGAGCGGAAAGGATTCACTCAGTTTACCCCTCGCTATATAACTTGGTTTTGTCCTGAAGCATTTCTCTTGAGCAAACAGTGCAAGTCTCAATGCATAAACAATGGAAGGTACTGTGCTCCAGATCCCGAGCAAGATTTCAGTAGTGGGTATGATGGCAAAGATGTTGTTGTTCAAAACTTACGCCAAGCTTGCTTCTATAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAGTGGTGGGACTATGTTACCGACTTTTCAATTCGTTGCCCCATGAAAGAGAAGAAGTACACAGAAGAATGCTCAGATCAAGTTATTAAATCTCTTGGTGCTGATCTGAAGAAGATTAAGGACTGTATTGGGGATCCCCATGCAGATGTTGAAAATCCTGTTCTTAAGGCTGAGCAGGAGGCACAGATTGGCAAAGGTACTCGTGGTGATGTGACTATACTGCCTACTCTTGTTATAAACAGCAGACAGTATAGAGGTAAGTTGTCAAGACCCGCTGTTCTCAAGGCAATCTGTGCAGGTTTCCTAGAGACCACTGAACCATCCGTTTGCTTAACTCCAGAAATGGAAACAGATGAGTGTTTGGTAAACAATGGTGGTTGTTGGAAGGAAAAATCCTCTAACATTACTGCTTGCCGGGACACTTTCCGAGGAAGAGTATGTGAATGCCCTGTTGTACAAAATGTGAAATTTGTTGGAGATGGATATACCCACTGTGAAGCATCTGGAACCTTGAGCTGTGACTTCAACAATGGTGGTTGTTGGAAGGGATCTCAAGGCGGCAGGGCTTACACGGCTTGTCTGGATGACTACAGAAAAGGCTGTACATGTCCTCCTGGGTTCAGAGGTGATGGAGTCCAATCATGTGAAGACATTGATGAGTGCCAAGAGAAAACAGCCTGCCAATGCCCAGCTTGCACATGCAAAAACACCTGGGGAAGTTATGAATGCAAATGTGGTAGTGGTTTGTTCTACTCACGAGAAAATGACACATGTCTAGGTGCATATTCTGCTACAGGGGTGAGCATATGGATGATTATCCTCATTGCGGTAGTTGCTGTTTCTGGAGGATATGCATTTTACAAGTACAGAATCCAGAGATACATGGATTCAGAAATACGGGCAATTATGGCACAATACATGCCTTTGGATAATCAACCTGAGGAATCTAATCAAGTTCATCATAATATCTAA 1947 0.433 MHFEFQFFLFILIFFLFLCGKKKKKKKKKMGIKLSLLLCVWGLLLGCTVGRFVVEKNSLRVTAPSSLKGTYECAIGNFGVPMYGGTLVGSVLYPKVNQKGCLNFTDVNFQSKPGGFPTFLLVDRGDCYFTLKAWNAQNGGAAAVLVADDKAETLITMDTPEEGKGTDDDYVENISIPSVLISKSLGDSIKKALSDGEMVNMNLDWREALPHPDDRVEYELWTNSNDECGQKCDSLINFLKDFKGVAQLLERKGFTQFTPRYITWFCPEAFLLSKQCKSQCINNGRYCAPDPEQDFSSGYDGKDVVVQNLRQACFYKVANESGKPWQWWDYVTDFSIRCPMKEKKYTEECSDQVIKSLGADLKKIKDCIGDPHADVENPVLKAEQEAQIGKGTRGDVTILPTLVINSRQYRGKLSRPAVLKAICAGFLETTEPSVCLTPEMETDECLVNNGGCWKEKSSNITACRDTFRGRVCECPVVQNVKFVGDGYTHCEASGTLSCDFNNGGCWKGSQGGRAYTACLDDYRKGCTCPPGFRGDGVQSCEDIDECQEKTACQCPACTCKNTWGSYECKCGSGLFYSRENDTCLGAYSATGVSIWMIILIAVVAVSGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPEESNQVHHNI 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00189 648 SUPERFAMILY PA domain 120 198 IPR046450 -
Vimu6g00189 648 ProSitePatterns Calcium-binding EGF-like domain signature. 542 568 IPR018097 GO:0005509
Vimu6g00189 648 CDD EGF_CA 542 573 - -
Vimu6g00189 648 Pfam Complement Clr-like EGF-like 526 545 IPR026823 -
Vimu6g00189 648 FunFam vacuolar-sorting receptor 1 435 491 - -
Vimu6g00189 648 Gene3D - 49 212 - -
Vimu6g00189 648 FunFam Vacuolar-sorting receptor 1 49 212 - -
Vimu6g00189 648 PANTHER PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN 30 640 - -
Vimu6g00189 648 SUPERFAMILY EGF/Laminin 539 584 - -
Vimu6g00189 648 Pfam PA domain 90 189 IPR003137 -
Vimu6g00189 648 Gene3D Laminin 496 580 - -
Vimu6g00189 648 SMART egfca_6 542 584 IPR001881 GO:0005509
Vimu6g00189 648 Gene3D Laminin 436 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00189 Vimu-Chr6 2466507 2471657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00189 32 648 Miscellaneous Gene Families AT3G52850 70.192 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00189 - - gmx:100807514 1189.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00189 6 2466507 2471657 Vimu6g00189 6 2466507 2471657 ECH
Vimu6g00189 6 2466507 2471657 Vimu9g01624 9 25452901 25458037 PCT