Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01616 ATGGAAACACACGTGAGATTTGGATTACGTACAATTTCCTTGGTCCTTTTTCTGACTCTTACTACAAGTTTAAGCTCAACTGCCTTTGATGTCAGTGAATATGAAGATGGGGAAAGCGTTGATATAGCAGATTCTATCTTAAGTTATGGAAATGAAATGGAAGACATGGAAGAAAACGAATGGCAGATGGTGCAAACTAAAGCAAACCAATTTGTGGTGAACGACCAACCTTTCTATGTCAATGGATTCAACACGTACTGGTTGATGGTATTTGCTGCGGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAACATGCATCCTCTGTGGGCATGACAGTTTGTAGGACTTGGGCCTTCAATGATGGCCAATGGCGTGCTCTTCAGAAATCTCCATCAGTTTATGATGAAGACGTGTTCAAGGCCTTGGATTTCGTGGTAAGTGAAGCAAAGAAATACAAAATAAGGCTCATATTATCACTGGTTAACAACTGGGAGGCTTACGGTGGCAAAGCACAGTATGTAAAGTGGGGCAATGCAGCTGGCCTCAACCTGACCTCTGATGATGCCTTTTTTTCACATCCAACTCTCAGAAGTTATTACAAGGCTCATGTTAAGGCATGTAGCTTCTTGCAATCCAATAGATCAAAAACCAACTTTTGTAAAGCCTGTTTTACTGTGCTCAATAGAGTTAATACATTCACAAATATCACTTACAAGGAAGATCCAACCATTTTTGCTTGGGAACTGATGAATGAGCCTCGGTGCAACTCAGACTCCACAGGTGATGTGTTACAGGATTGGATAAAAGAAATGGCATTCTATGTGAAAAGCATTGATACAAAACATCTGGTGGAGATTGGACTGGAAGGATTTTATGGCCCCTCGACACCTCAAAGATATCAGTTAAACCCAAATGCATATGCTCACCAGGTCGGAACAGATTTTATCAGGAACCACCAGGTTCTAGGTGTTGACTTCGCTTCTGTTCACATATATCCAGACTCTTGGATTTCACAATCAATTGCTGATTCCCACCTCCCATTTATAAAGTCTTGGATGGAAGCGCACATAGAGGATGCTGAAAAGTATCTCGGAATGCCTGTTGTTTTTAGTGAGTTTGGTGTGTCTGCAAAAGCTCCTGGCTTCAATTCATCATACAGAGACAACCTTATAAACACTGTGTACAAGACAATCCTAAACTCTACCAAGAAAGGAGGCAGTGGAGCTGGAAGCCTTGTGTGGCAGCTCTTTCCTGATGGAACAGATTACATGGATGATGGGTATGCAATTGTTCTCTCAAAATCACCTTCCACATCAAGCATTATATCCCTTCAATCCACAAGGCTAGCCCTCTTCAATTCCTTGTGCTCTACAAAATGCCGTTGGGGTTGTAAGAAGCGAAATGTGTTGGAAACAGTACTCTATCATGACGAACTCTAA 1446 0.4191 METHVRFGLRTISLVLFLTLTTSLSSTAFDVSEYEDGESVDIADSILSYGNEMEDMEENEWQMVQTKANQFVVNDQPFYVNGFNTYWLMVFAADESTRGKVTEVFKHASSVGMTVCRTWAFNDGQWRALQKSPSVYDEDVFKALDFVVSEAKKYKIRLILSLVNNWEAYGGKAQYVKWGNAAGLNLTSDDAFFSHPTLRSYYKAHVKACSFLQSNRSKTNFCKACFTVLNRVNTFTNITYKEDPTIFAWELMNEPRCNSDSTGDVLQDWIKEMAFYVKSIDTKHLVEIGLEGFYGPSTPQRYQLNPNAYAHQVGTDFIRNHQVLGVDFASVHIYPDSWISQSIADSHLPFIKSWMEAHIEDAEKYLGMPVVFSEFGVSAKAPGFNSSYRDNLINTVYKTILNSTKKGGSGAGSLVWQLFPDGTDYMDDGYAIVLSKSPSTSSIISLQSTRLALFNSLCSTKCRWGCKKRNVLETVLYHDEL 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01616 481 PANTHER - 15 471 IPR045053 GO:0004553
Vimu9g01616 481 Pfam Cellulase (glycosyl hydrolase family 5) 75 395 IPR001547 GO:0004553|GO:0071704
Vimu9g01616 481 Gene3D Glycosidases 61 454 - -
Vimu9g01616 481 SUPERFAMILY (Trans)glycosidases 63 438 IPR017853 -
Vimu9g01616 481 FunFam Mannan endo-1,4-beta-mannosidase 6 60 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01616 Vimu-Chr9 25412210 25414380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01616 54 481 Glycoside Hydrolase AT5G01930 71.163 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01616 K19355 - gmx:100801139 827.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00198 6 2566980 2569532 Vimu9g01616 9 25412210 25414380 PCT