Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00198 ATGGAGATATTTGGTGTTCGCATTATTTCTTTGGTACTTTTCTTGATGCTTACTAAAAACTTAAGTTGCAATGCTTTTGGTGGGAGTATGAAGGATGAGGAAGCACTCAAGGAAGGCCAAAATGACATGGAAAATTATGTCTCAAATTATGGTGAAATGGGGGGCGTGGAAGATGATGATTGGCAGATGGTGCAAAAGAAGGGAAACCAATTTGTTGTTAATGACAAACCTTTCTATGTGAATGGATTCAACACATATTGGCTTATGGTATTTGCTGCAGATGAGTCCACCAGAGGAAAGGTCACTGAGGTGTTCAAGCAGGCATCCTCAGTGGGTATGACAGTTTGTAGGACGTGGGCCTTCAATGATGGCCAATGGAGGGCCCTACAGAAATCTCCATCAGTTTATGATGAAGAAGTCTTCAAGGCCCTGGACTTTGTGGTGAGTGAAGCAAAGAAATACAAAATCAGGCTCATATTATCATTGTCTAACAACTGGGAGGCATATGGAGGCAAAGCACAATATGTGAAATGGGGAAATGCTGCTGGCCTTAACTTGACCTCTGATGATGACTTCTTCTCACATCCAACTCTTAGAAGCTACTACAAGGCCCATACTGTGCTCAATAGAGTTAACACATTCACAAATATCACTTACAAGGAGGATCCAACAATTTTTGCTTGGGAGTTGATGAATGAGCCTCGTTGCACCTCAGATCCCACAGGTGACAAGTTACAGGATTGGATTCAAGAAATGGCATTCCAAGTGAAGAAAATTGATCCAAAACACCTAGTAGAGGTTGGACTAGAAGGATTTTATGGCCCATCAACACCTCAGAGAACTCAGTTCAATCCCAATACATATGCTACACAGGTTGGAACTGATTTTGTAAGGAACCACCTGGCTCTTGGTGTGGACTTCGCTTCTGTTCATATATATGCTGACTCTTGGATTTCACAACAAATTGCTGATTCTCATCTCTCATTTGTAAAATCATGGATGGAAGCCCACATAGAGGATGCTGAAAAGCATCTTGGAATGCCAGTTGTTTTTGCTGAGTTTGGTGTATCTTCCAAAGACCCTGGCTACAATTCATCATACAGAGATACACTCATAAGTAGTGTGTACAATACCATCCTAAACTCCACAAAGAAAGGAGGGAGTGGGGCTGGAAGCCTTTTGTGGCAATTTTTTCCTGATGGAACTGATAACATGGATGATGGCTATGCAATTGTTCTCTCAAAATCTCCCTCCACCTCAAACATTATACAGCTTCAATCCACTAGGCTTGCGATGTTCAATTCCTTGTGCAATACTAAATGCAACTGGGGATGTAAGAAGAAAAAGTTGTTGAACAACATACTCTATCACGATGAACTGTAA 1383 0.4143 MEIFGVRIISLVLFLMLTKNLSCNAFGGSMKDEEALKEGQNDMENYVSNYGEMGGVEDDDWQMVQKKGNQFVVNDKPFYVNGFNTYWLMVFAADESTRGKVTEVFKQASSVGMTVCRTWAFNDGQWRALQKSPSVYDEEVFKALDFVVSEAKKYKIRLILSLSNNWEAYGGKAQYVKWGNAAGLNLTSDDDFFSHPTLRSYYKAHTVLNRVNTFTNITYKEDPTIFAWELMNEPRCTSDPTGDKLQDWIQEMAFQVKKIDPKHLVEVGLEGFYGPSTPQRTQFNPNTYATQVGTDFVRNHLALGVDFASVHIYADSWISQQIADSHLSFVKSWMEAHIEDAEKHLGMPVVFAEFGVSSKDPGYNSSYRDTLISSVYNTILNSTKKGGSGAGSLLWQFFPDGTDNMDDGYAIVLSKSPSTSNIIQLQSTRLAMFNSLCNTKCNWGCKKKKLLNNILYHDEL 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00198 460 Gene3D Glycosidases 61 434 - -
Vimu6g00198 460 PANTHER - 12 450 IPR045053 GO:0004553
Vimu6g00198 460 SUPERFAMILY (Trans)glycosidases 63 414 IPR017853 -
Vimu6g00198 460 FunFam Mannan endo-1,4-beta-mannosidase 6 60 434 - -
Vimu6g00198 460 Pfam Cellulase (glycosyl hydrolase family 5) 74 371 IPR001547 GO:0004553|GO:0071704
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00198 Vimu-Chr6 2566980 2569532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00198 56 460 Glycoside Hydrolase AT5G01930 72.372 0.0 649
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00198 K19355 - gmx:100811794 882.093
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00198 6 2566980 2569532 Vimu6g00198 6 2566980 2569532 ECH
Vimu6g00198 6 2566980 2569532 Vimu9g01616 9 25412210 25414380 PCT