Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01613 ATGGAGAAAGGAAAAATGTTGGTGTTTGTTGTGCTGACACTGTTGTTTTGCTCTTTATGTGATTCTTCAAGGTTGATGAAGAATGTTGAAAGCCAAAATAGGAGAAATCTTCTTGCGAATGGCCTTGGTCTCACTCCTCCAATGGGGTGGAATAGCTGGAATCATTATCACGAGAATATAAATGAAACCATCATCCGAAAAGCAGCTAATGTCCTTGTTTCTTCTGGTCTTTCTGAGCTTGGCTACATTTATGTTAACATAGATGATGGCTGGGGTGAAATGACTCGAGATATCGATGGTAATTTGGTACCTGATAAAAAACATTTTCCTTCTGGCATCAAAGCCCTAGCAGATTATGTTCATAAGAAGGGTTTGAAGCTTGGCATTTATGCTGATGCAGGGTACTATACTTGTGCAAAACGTATGCCTGGTTCACTTGGTTATGAAGAGCAAGATGCCAAGACTTTTGCATCATGGGGTGTTGATTATCTCAAGTATGATAATTGTAACAATGGTGGAATAAAGCCTCTTCAAAGATATCCTATTATGACTCGAGCTTTGATGAAGGCAGGCCGTCCAATCTACTTCTCATTATGTGAATGGGGAGACATGCACCCTGCATTATGGGGTTTTCCAGTGGGAAATAGCTGGAGAACTAGTGATGACATTGATGATAACTGGGAAAGAATGGTTTCAAGAATAGACAGAAATGATGTTTATGCTGATTTTGCAAAACCTGGTGGTTGGAATGATCCTGACATGCTGGAGGTAGGAAATGGAAAGATGAAGAAACATGAATACGTTGTTCACTTCAGTTTATGGGCCATCTCCAAGGCTCCTCTTCTTATTGGCTGTGATCTTGGAAAAATGGACGATGACACTCTAGAGATACTATCTAATGCAGAAGTTATTGCAGTTAACCAAGATCCACTTGGTGTACAAGCTAAAAGGGTTTGGGCAGGTCCTCTTTCAGAATACAGGGTGGCTGTTCTCTTACTGAATAAATTCAGTGATCGCCGATCAGAGATAACTGCAGAATGGGAAGATATTGGCCTTGACCCTTCAACTGTTGTTCAAGCAAGAGATCTTTGGGAGCACGAGACATTGGAAAGACAGTTCGTGGGCAAAATGACTGTCACTGTTGAACCACATTCTTGCAAGATGTATGTGTTGAAGCCAATAGCTTGA 1188 0.4099 MEKGKMLVFVVLTLLFCSLCDSSRLMKNVESQNRRNLLANGLGLTPPMGWNSWNHYHENINETIIRKAANVLVSSGLSELGYIYVNIDDGWGEMTRDIDGNLVPDKKHFPSGIKALADYVHKKGLKLGIYADAGYYTCAKRMPGSLGYEEQDAKTFASWGVDYLKYDNCNNGGIKPLQRYPIMTRALMKAGRPIYFSLCEWGDMHPALWGFPVGNSWRTSDDIDDNWERMVSRIDRNDVYADFAKPGGWNDPDMLEVGNGKMKKHEYVVHFSLWAISKAPLLIGCDLGKMDDDTLEILSNAEVIAVNQDPLGVQAKRVWAGPLSEYRVAVLLLNKFSDRRSEITAEWEDIGLDPSTVVQARDLWEHETLERQFVGKMTVTVEPHSCKMYVLKPIA 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01613 395 FunFam Alpha-galactosidase 38 311 - -
Vimu9g01613 395 SUPERFAMILY Glycosyl hydrolase domain 311 394 - -
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 76 91 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 117 138 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 152 169 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 244 263 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 265 286 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 40 59 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 PRINTS Glycosyl hydrolase family 27 signature 179 197 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 SUPERFAMILY (Trans)glycosidases 39 310 IPR017853 -
Vimu9g01613 395 ProSitePatterns Alpha-galactosidase signature. 81 97 IPR000111 GO:0004553|GO:0005975
Vimu9g01613 395 CDD GH27 46 309 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 Gene3D Aldolase class I 38 309 IPR013785 -
Vimu9g01613 395 Pfam Alpha galactosidase A 45 309 IPR002241 GO:0004553|GO:0005975
Vimu9g01613 395 Pfam Alpha galactosidase C-terminal beta sandwich domain 317 391 IPR041233 -
Vimu9g01613 395 Gene3D - 310 394 IPR013780 -
Vimu9g01613 395 FunFam Alpha-galactosidase 309 394 - -
Vimu9g01613 395 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 7 393 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01613 Vimu-Chr9 25397091 25400592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01613 35 391 Glycoside Hydrolase AT5G08370 61.644 1.19e-169 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01613 K07407 - gmx:100789787 658.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01613 9 25397091 25400592 Vimu6g00199 6 2575783 2579141 PCT