Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00199 ATGGATAGAAGAAGGTTTGCCTATGAAGTGCTGGTGGCTTTGTTGCCCCTTTTGCTCTGCTCATTAAATTGTGCCAATGCTTCATCATCAGACCCAGCACAACTCCATGACCATGTGGAGCAACACAAGAGGAATCTTCTTGCTAATGGCCTTGGTACAACTCCTCCAATGGGTTTCCCTGTTCATCTTGCAACACTCCTTAACCGACTGTCGGTTTATGTTGTGAACAGCGCTGCTGATGCCCTTGTTTCTACTGGTCTTTCTAAGCTTGGATACACATATGTCAATATAGCACAAGCAGTTAAACTTAATCCAAAATTTTCTATTATTGCAGATGATTGTTGGGCCGAATTAAACAGGGATGCTAATGGTAATCTGGTAGCAAAAAAATCAACATTTCCTTCTGGAATCAAAGCTCTTGCAGATTATGTTCATAGCAAAGGTCTTAAACTTGGAATTTATTCAGATGCTGGGTATTTTACTTGTAGCAAACAGATGCCTGGTTCTCTTGGTCATGAGTTTCAAGATGCCAAGACTTTTGCGTCATGGGGTATTGATTATTTGAAGTATGATAACTGTAACAATGATGAATCAAAACCAACTGATAGTTTTGAAAACTATGGTCTTCATATGATTAGATACCCTGTTATGACTCGGGCTTTATCAATGGCTGGTCGTCCAATCTTCTTCTCGCTATGCGAATGGGGAGATTTGCACCCTGCTTTATGGGGTGCTAAAGTGGGAAACAGCTGGAGAACTACCAATGACATTAATGATTCATGGGAAAGCATGATTTCAAAGGCAGACATGAACGAAGTTTATGCTGAATATGCAAGACCTGGTGGTTGGAATGATCCTGACATGCTTGAGGTGGGAAATGGAGGGATGACAAAAAATGAATATATTGTTCACTTCAGTTTATGGGCCCTTTCCAAGGCTCCTCTTCTTCTTGGCTGTGATGTTAGAAATATGACCAAAGACACTGTTGACATTGTAACAAATAAGGAAGTTATTGCAGTTAACCAAGGTGTGCAAGGTAAGAAGGTTAGGATGGAAGGTGATATTGAGATTTGGGCAGGTCCTCTTTCAAGGTACAGGGTGGCTGTTGTCTTGCTAAACCGTGGCCCTTGGAATATTTCCATCACAGCCTATTGGGATGATATTGGTATTCCATCAAAAAGTGCTGTTGAAGCAAGAGACCTTTGGGAGTCTTGCATGCATGCTTTTGTTTTCATCGGTACTACTGATGCTGTGACTTATCTGCTACAATGCATGCTTTGTTTTTATCACAACTCTGTTGATACTGATGCTGTGACTTATCTGCTACAATGGATGCAGCACAAGACACTGGTGGGACGCTTTAAGGAAAAATTGACTGCCCAAGTTGAGCCACATGCGTGTAAAATGTACGTGCTGAAGCCAGTTGCTTGA 1431 0.4151 MDRRRFAYEVLVALLPLLLCSLNCANASSSDPAQLHDHVEQHKRNLLANGLGTTPPMGFPVHLATLLNRLSVYVVNSAADALVSTGLSKLGYTYVNIAQAVKLNPKFSIIADDCWAELNRDANGNLVAKKSTFPSGIKALADYVHSKGLKLGIYSDAGYFTCSKQMPGSLGHEFQDAKTFASWGIDYLKYDNCNNDESKPTDSFENYGLHMIRYPVMTRALSMAGRPIFFSLCEWGDLHPALWGAKVGNSWRTTNDINDSWESMISKADMNEVYAEYARPGGWNDPDMLEVGNGGMTKNEYIVHFSLWALSKAPLLLGCDVRNMTKDTVDIVTNKEVIAVNQGVQGKKVRMEGDIEIWAGPLSRYRVAVVLLNRGPWNISITAYWDDIGIPSKSAVEARDLWESCMHAFVFIGTTDAVTYLLQCMLCFYHNSVDTDAVTYLLQWMQHKTLVGRFKEKLTAQVEPHACKMYVLKPVA 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00199 476 FunFam Alpha-galactosidase 47 345 - -
Vimu6g00199 476 Gene3D - 344 419 IPR013780 -
Vimu6g00199 476 PANTHER ALPHA-GALACTOSIDASE/ALPHA-N-ACETYLGALACTOSAMINIDASE 14 474 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 SUPERFAMILY (Trans)glycosidases 49 342 IPR017853 -
Vimu6g00199 476 SUPERFAMILY Glycosyl hydrolase domain 343 474 - -
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 278 297 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 299 320 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 176 193 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 141 162 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 213 231 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 PRINTS Glycosyl hydrolase family 27 signature 49 68 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 FunFam Alpha-galactosidase 343 428 - -
Vimu6g00199 476 CDD GH27 77 342 IPR002241 GO:0004553|GO:0005975
Vimu6g00199 476 Gene3D Aldolase class I 47 343 IPR013785 -
Vimu6g00199 476 Pfam Alpha galactosidase C-terminal beta sandwich domain 352 404 IPR041233 -
Vimu6g00199 476 Pfam Alpha galactosidase A 74 342 IPR002241 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00199 Vimu-Chr6 2575783 2579141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00199 44 472 Glycoside Hydrolase AT5G08370 53.917 7.36e-159 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00199 K07407 - gmx:100804290 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g01613 9 25397091 25400592 Vimu6g00199 6 2575783 2579141 PCT