Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01600 ATGACGGTAAATAGTGCATCTAGGTTTCTTTCTTATTACACGGGATCTCTATGTGCAGAAATATTGAGAGTTTCTGGAATGCTGTCCAATCAAGGTTTTGGTGACTTTGATAGACTGCGGCACAGAAGCCCTAGTCCAATGGCTTCTTCAAACCTCATGTCAAGTGTCACTGGAACGGGGTTAGGTGGATGGAATGGTCTTCAGCAAGAGAGGTTGAGGGGAACTCCTGGAATGACAATGGACTGGCAAGTTGCACCTGCAAGTCCTAGTTCGTATACAGTTAAGAGGATTTTGCGCTTGGAAATTCCAGTTGATACATACCCCAATTTCAATTTTGTTGGAAGGCTTCTGGGACCAAGAGGCAATTCTCTGAAAAGGGTGGAAGCTTCTACTGGTTGCCGGGTGTATATTAGAGGAAAGGGTTCAATAAAAGATCCGGACAAGGAAGAAAAACTAAGAGGAAGACCAGGCTATGAGCATCTCAATGAGCCACTCCATATCTTGATTGAGGCTGATTTACCTGCTAATATTGTTGACATAAGGCTCCGACAGGCTCAGGAAATCATAGAAGAATTGCTCAAACCTGTGGATGAGTCTGAGGACTATATCAAGAGACAGCAGTTGCGTGAATTGGCGATGCTGAATTCAAATTTCAGAGAAGAGAGTCCTGGACCAAGTGGAAGTGTATCTCCATTCAACTCCAGTGGAATGAAAAGAGCCAAAACTGGTCGATGA 735 0.4408 MTVNSASRFLSYYTGSLCAEILRVSGMLSNQGFGDFDRLRHRSPSPMASSNLMSSVTGTGLGGWNGLQQERLRGTPGMTMDWQVAPASPSSYTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEASTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESEDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01600 244 MobiDBLite consensus disorder prediction 218 244 - -
Vimu9g01600 244 Pfam KH domain 111 147 IPR004088 GO:0003723
Vimu9g01600 244 CDD KH-I_SPIN1_like 95 195 - -
Vimu9g01600 244 Gene3D K Homology domain, type 1 4 225 IPR036612 GO:0003723
Vimu9g01600 244 ProSiteProfiles Type-1 KH domain profile. 111 168 - -
Vimu9g01600 244 SMART kh_6 94 194 IPR004087 GO:0003676
Vimu9g01600 244 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 101 219 IPR036612 GO:0003723
Vimu9g01600 244 PANTHER RNA-BINDING PROTEIN RELATED 19 235 IPR045071 -
Vimu9g01600 244 MobiDBLite consensus disorder prediction 219 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01600 Vimu-Chr9 25313273 25316769 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01600 K14945 - gmx:100791899 427.557
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00223 6 2770630 2772471 Vimu9g01600 9 25313273 25316769 PCT