Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00223 ATGACAATGGACTGGCAAAGTGCACCTGCAAGTCCTAGTTCATTCACTGTTAAGAGGATATTGCGCTTGGAAATTCCAGTAGATACATATCCCAATTTCAATTTTGTTGGAAGGCTTCTGGGGCCTAGAGGCAATTCCTTGAAACGTGTAGAAGCTACAACTGGGTGTCGTGTGTATATTAGGGGAAAAGGTTCAATAAAGGATCCAGACAAGGAGGAGAAATTAAGAGGAAGACCAGGCTATGAGCATCTCAATGAACCCCTGCACATTTTGATTGAGGCTGACTTACCAGCCAATGTTGTTGAAATAAGGCTCAGGCAGGCTCAGGAAATTATTGAAGAACTGCTCAAGCCTGTGGAGGAGTCACAGGACTACATCAAGAGGCAGCAGTTGCGTGAACTTGCTATGCTGAATTCAAATTTCAGAGAAGAGAGTCCAGGGCCAAGTGGTAGTGTGTCTCCATTCAACTCCAGTGGAATGAAACGCGCAAAGACAGGTCGCTGA 504 0.4524 MTMDWQSAPASPSSFTVKRILRLEIPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSIKDPDKEEKLRGRPGYEHLNEPLHILIEADLPANVVEIRLRQAQEIIEELLKPVEESQDYIKRQQLRELAMLNSNFREESPGPSGSVSPFNSSGMKRAKTGR 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00223 167 MobiDBLite consensus disorder prediction 142 167 - -
Vimu6g00223 167 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 24 142 IPR036612 GO:0003723
Vimu6g00223 167 Gene3D K Homology domain, type 1 2 148 IPR036612 GO:0003723
Vimu6g00223 167 Pfam KH domain 29 70 IPR004088 GO:0003723
Vimu6g00223 167 ProSiteProfiles Type-1 KH domain profile. 34 91 - -
Vimu6g00223 167 MobiDBLite consensus disorder prediction 141 167 - -
Vimu6g00223 167 PANTHER RNA-BINDING PROTEIN RELATED 9 159 IPR045071 -
Vimu6g00223 167 SMART kh_6 17 117 IPR004087 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00223 Vimu-Chr6 2770630 2772471 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00223 K14945 - gmx:100797384 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00223 6 2770630 2772471 Vimu6g00223 6 2770630 2772471 ECH
Vimu6g00223 6 2770630 2772471 Vimu9g01600 9 25313273 25316769 PCT