Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01479 ATGTCCGGCCACTGGGGGATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACACAAGTGGAACTACGCAGCTTAAAATCCCATTTCATGAGCATGAGGAGGGAGAGTGGGAGGCTTGTGATTGCGGATTTGGCTTCGAAGATGTCAAGGTTGAAGGTGGTGGGAGAGAATCTGAGTGAAGAAGAGAGAGCTTCTTGTGTGAAGGATTTGTATCCAAACACTGAGGATGAAGTTGATTTTGAATTGTTTCTTAAGGTCTACTTGAAACTCCAAACTTTTTCAAATTCTAGAACTGGAAGTAGTCCAAAGAACGCCTCAGCTTTCCTCAAGGCAGCTACAACCACATTGCTTCACACAATTAGTGAATCTGAGAAAGCATCATATGTAGCACATATAAATCACTATCTTGCAAAGGATGAGTTCCTTAAGAAATATCTTCCTATTGACCCTTCAACCAATGAGCTCTTTGAAATTGCAAAAGATGGTGTTCTTCTTTGCAAGCTTATCAATGTGGCAGTTCCAGGGACCATTGATGAACGAGCAATCAATACAAAAAGAATACTCAATCCGTGGGAAAGGAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACAGTGGTTAACATTGGCACTCAGGACTTCATTGAAGGAAGGCGTCACCTGGTGCTTGGGGTGATTTCTCAGATTATTAAGATACAATTATTGGCGGACCTTGATCTGAAGAAAACTCCTCAGCTTCTTGAGTTGCTTGATGATAGTAAGGATATGGAAGAGTTGATGAATCTACCACCAGAAAAGATCTTGTTAAGGTGGATGAATTTCCATCTGAAGAAAGCAGGGTACAAGAAGATTGTCACTAACTTCTCCTCTGATGTGAAGGATGCTGAGGCTTATGCACACCTTCTAAATGTTCTTGCACCTGAATACATCAATCCCTCCACATTGGCAGTTAAAAATCCCTTTGAGAGAGCAAAGTTAGTTCTAGAACATGCTGATAAGATGGGTTGCAAGAGATACTTAACTGCAAGAGACATTGTGGAAGGATCTCCAAATCTTAATCTTGCCTTTGTTGCACATATTTTCCAGCATAGGAATGGACTTTCAGCTCAGACAAAACAACAGATGTCTCTCCTTGAAACATTTCCAGATGATACTCAAGACTCTAGAGAAGAAAGAGCATTTCGCCTTTGGATGAATAGCCTTGGAAATTCAACATATATCAACAATGTCTTTGAGGATCTCCGAAACGGATGGGTTCTTCTTGAGACTCTTGACAAGGTGTCACCAGGGATTGTCCATTGGAAAATTGCCAACAAGCCTCCAATTAAGATGCCATTTAGAAAAGTGGAGAACTGCAACCAAGTTGTGAAAATAGGGAAACAGCTTAAATTTTCGCTGGTAAATGTTGCTGGAAACGACATTGTGCAGGGAAATAAAAAGTTAATACTAGCTTATTTGTGGCAATTGATGCGATACAACATTCTACAACTTCTCAAGAACTTGAGATTTCACTCTCGTGGGAAGGAGATAACTGATGCTGATATTTTAGAATGGGCCAACAGCAAGGTTAGCAGCTCCGGAAGTCAAAGCCGCATGGACAGTTTTAAGGATAGAAGTTTATCAGATGGAATATTTTTCCTTGAGCTTCTAAGTTCAGTGCAGCACAGAGCAGTAAATTGGGGTCTTGTAACAAAAGGAGTAACCGACCAGGAGAAAAAGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGATGTTCTATATTCCTGCTTCCTGAAGACATCACTGAGGTAGTTTTGAATCAATCCTTTTACCAGTGCACATTTAGAGAATTTCTTTAA 1866 0.4046 MSGHWGILVSDPWLQNQFTQVELRSLKSHFMSMRRESGRLVIADLASKMSRLKVVGENLSEEERASCVKDLYPNTEDEVDFELFLKVYLKLQTFSNSRTGSSPKNASAFLKAATTTLLHTISESEKASYVAHINHYLAKDEFLKKYLPIDPSTNELFEIAKDGVLLCKLINVAVPGTIDERAINTKRILNPWERNENHTLCLNSAKAIGCTVVNIGTQDFIEGRRHLVLGVISQIIKIQLLADLDLKKTPQLLELLDDSKDMEELMNLPPEKILLRWMNFHLKKAGYKKIVTNFSSDVKDAEAYAHLLNVLAPEYINPSTLAVKNPFERAKLVLEHADKMGCKRYLTARDIVEGSPNLNLAFVAHIFQHRNGLSAQTKQQMSLLETFPDDTQDSREERAFRLWMNSLGNSTYINNVFEDLRNGWVLLETLDKVSPGIVHWKIANKPPIKMPFRKVENCNQVVKIGKQLKFSLVNVAGNDIVQGNKKLILAYLWQLMRYNILQLLKNLRFHSRGKEITDADILEWANSKVSSSGSQSRMDSFKDRSLSDGIFFLELLSSVQHRAVNWGLVTKGVTDQEKKMNATYIISIARKLGCSIFLLPEDITEVVLNQSFYQCTFREFL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01479 621 CDD CH_AtFIM_like_rpt3 392 505 - -
Vimu9g01479 621 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Vimu9g01479 621 FunFam Plastin-3 isoform 1 510 610 - -
Vimu9g01479 621 SMART ch_5 125 238 IPR001715 GO:0005515
Vimu9g01479 621 SMART ch_5 517 619 IPR001715 GO:0005515
Vimu9g01479 621 SMART ch_5 270 369 IPR001715 GO:0005515
Vimu9g01479 621 SMART ch_5 396 498 IPR001715 GO:0005515
Vimu9g01479 621 Gene3D - 508 612 IPR036872 -
Vimu9g01479 621 Pfam Calponin homology (CH) domain 518 614 IPR001715 GO:0005515
Vimu9g01479 621 Pfam Calponin homology (CH) domain 151 238 IPR001715 GO:0005515
Vimu9g01479 621 Pfam Calponin homology (CH) domain 396 499 IPR001715 GO:0005515
Vimu9g01479 621 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Vimu9g01479 621 FunFam Fimbrin-2 like 119 245 - -
Vimu9g01479 621 CDD CH_AtFIM_like_rpt1 124 239 - -
Vimu9g01479 621 PANTHER FIMBRIN/PLASTIN 4 606 IPR039959 GO:0051015|GO:0051017
Vimu9g01479 621 Gene3D - 390 507 IPR036872 -
Vimu9g01479 621 ProSiteProfiles Calponin homology (CH) domain profile. 515 621 IPR001715 GO:0005515
Vimu9g01479 621 SUPERFAMILY Calponin-homology domain, CH-domain 121 605 IPR036872 -
Vimu9g01479 621 Gene3D - 119 245 IPR036872 -
Vimu9g01479 621 ProSiteProfiles Calponin homology (CH) domain profile. 394 500 IPR001715 GO:0005515
Vimu9g01479 621 Gene3D - 246 374 IPR036872 -
Vimu9g01479 621 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Vimu9g01479 621 FunFam Fimbrin-2 isoform A 246 374 - -
Vimu9g01479 621 FunFam Fimbrin-2 like 390 507 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01479 Vimu-Chr9 23918975 23927273 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01479 1 606 EF-hand Containing Proteins AT5G55400 65.132 0.0 839
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01479 - K17275 gmx:100799696 1176.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03926 6 38726464 38733373 Vimu9g01479 9 23918975 23927273 PCT