Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03926 ATGTCTGGTCACTGGGGTATTCTTGTTTCAGATCCATGGCTTCAGAACCAGTTCACCCAGGTGGAGCTTCGCAGCTTGAAATCCCAATTCGTGAGCATGAGGAGGGAGAGTGGAAGGCTTGCGGTTGGGGACTTGGCTTCCAAGATGTCAAGGTTGAAGGTTGTGGGAGAGAATCTCAGTGAAGAAGAGAGAGCTTCTTATATTCAAGATTTGTATCAGAACACAAGTGAAGAGGTTGATTTTGAATTGTTTCTCAAGGTTTACTTAAAACTGCAAAGTTTTGCAAGTTCTAGGACGGGGAGTAATGCAAAAAACTCATCAGCGTTCCTCAAGGCTGCAACTACCACATTGCTTCACACAATAAGTGAATCTGAGAAGGCATCATATGTTGCACATATAAATAACTATCTTGCAGGAGATGAATTTCTCAAGAAATGCCTTCCTATTGATTCTTCAACCAATGACCTATTTGAAATAGCAAAAGATGGTGTTCTTCTTTGTAAGCTGATTAATGTGGCTGTTCCACGGACCATTGATGAAAGGGCAATCAATACAAAAAGATTACTTAATCCATGGGAAAGGAATGAAAACCACACGCTTTGCCTGAACTCTGCTAAAGCAATTGGATGTACAGTAGTCAACATTGGAACTCAAGACCTCATTGAAGGAAGGCGTCATCTGGTGCTTGGATTAATTTCACAGATTATTAAGATACAACTATTGGCGGATCTGAACCTAAAGAAAACACCACAGCTTGTGGAGTTGGTCAGTGATAGTGAGGGTATGGAAGAGTTGATGAGTCTGGCACCAGAAAAGATTTTGTTAAGGTGGATGAATTTCCATTTGAAGAAATCAGGTTACAAGAAGATAGTCACGAATTTCTCCTCTGATGTTAGGGATGCAGAAGCTTATGCTCACCTTCTAAATGTTCTTGCACCTGAATACACTAATCCATCCACATTGGCTGTCAAAAATCCTTACGAACGAGCAAAATTAGTTCTTGAACATGCTGATAAGATGGGTTGCGAGCGATACATAACGGGGAGAGATATAGTGGAAGGTTCCCCAAATCTTAACCTTGCTTTTGTTGCACATATTTTCCAACACAGGAATGGACTATCAACCCAAGCAAAACAAAGTTCTCTCCTTGAAAACTTGTTAGATGACACCCAAGACTCTAGAGAAGAGAGAGCATTTCGCCTCTGGATCAATAGCCTTGGAAATTCAACATACATCAACAATGTCTTTGAGGATGTTAGAAATGGGTGGGTACTCTTGGAGACTCTAGACAAAGTGTCACCAGGGATTGTGAATTGGAAGATTGCTAATAAGCCACCTATTAAGTTGCCATTTAAAAAAGTAGAGAATTGCAATCAAGTGGTGAAAATAGGGAAACAGCTTAAATTTTCCCTGGTAAATATTGCTGGGAATGACATTGTGCAGGGTTATAAAAAATTAATACTAGCATATTTGTGGCAGTTGATGCGATACAACATCCTACAACTTCTAAAAAACTTGAGATTTCACTCTCATGGGAAGGAAATAACTGATGCTGATATTCTCCGATGGGCAAACAGCAGAGTCAGTAGTTCAGGAAGTCAAAGCCGAATGGATAGTTTCAAGGACAAGAGTGTATCAGATGGAATTTTTTTCCTTGAGCTTCTTAGTTCTGTGCAACCTAGAGCTGTAAATTGGGGTCTTGTAACAAAAGGAATAACTGATCAGGAGAAAATGATGAATGCCACCTACATTATCAGTATTGCAAGAAAGCTTGGTTGTTCCATATTCTTGCTTCCTGAAGACATCACTGAGGTTAATCAAAAGATGATCCTTACTCTAACAGCTACCATAATGTATTGGTTCTTGAAACACCCTCTTGAAGAAAGAACAGTAGGGAGTTCAGACAGTGAGAGTGGGAGCCAATTGGAGACTACATCAAATTCAACACTGGATGAAGATTCTGTTTCTGATTCATCAGCAGAAGAGAATGGAAGCATGTAA 2001 0.3998 MSGHWGILVSDPWLQNQFTQVELRSLKSQFVSMRRESGRLAVGDLASKMSRLKVVGENLSEEERASYIQDLYQNTSEEVDFELFLKVYLKLQSFASSRTGSNAKNSSAFLKAATTTLLHTISESEKASYVAHINNYLAGDEFLKKCLPIDSSTNDLFEIAKDGVLLCKLINVAVPRTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLADLNLKKTPQLVELVSDSEGMEELMSLAPEKILLRWMNFHLKKSGYKKIVTNFSSDVRDAEAYAHLLNVLAPEYTNPSTLAVKNPYERAKLVLEHADKMGCERYITGRDIVEGSPNLNLAFVAHIFQHRNGLSTQAKQSSLLENLLDDTQDSREERAFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKLPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRYNILQLLKNLRFHSHGKEITDADILRWANSRVSSSGSQSRMDSFKDKSVSDGIFFLELLSSVQPRAVNWGLVTKGITDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTATIMYWFLKHPLEERTVGSSDSESGSQLETTSNSTLDEDSVSDSSAEENGSM 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03926 666 ProSitePatterns Actinin-type actin-binding domain signature 2. 212 236 IPR001589 -
Vimu6g03926 666 ProSiteProfiles Calponin homology (CH) domain profile. 268 371 IPR001715 GO:0005515
Vimu6g03926 666 Pfam Calponin homology (CH) domain 395 498 IPR001715 GO:0005515
Vimu6g03926 666 Pfam Calponin homology (CH) domain 145 238 IPR001715 GO:0005515
Vimu6g03926 666 Pfam Calponin homology (CH) domain 517 621 IPR001715 GO:0005515
Vimu6g03926 666 Pfam Calponin homology (CH) domain 269 370 IPR001715 GO:0005515
Vimu6g03926 666 Gene3D - 119 245 IPR036872 -
Vimu6g03926 666 CDD CH_AtFIM_like_rpt1 124 239 - -
Vimu6g03926 666 CDD CH_AtFIM_like_rpt3 391 504 - -
Vimu6g03926 666 Gene3D - 389 506 IPR036872 -
Vimu6g03926 666 FunFam Fimbrin-1 isoform A 507 619 - -
Vimu6g03926 666 MobiDBLite consensus disorder prediction 632 666 - -
Vimu6g03926 666 FunFam Fimbrin-2 isoform A 246 374 - -
Vimu6g03926 666 Gene3D - 246 374 IPR036872 -
Vimu6g03926 666 ProSiteProfiles Calponin homology (CH) domain profile. 514 622 IPR001715 GO:0005515
Vimu6g03926 666 ProSitePatterns Actinin-type actin-binding domain signature 1. 395 404 IPR001589 -
Vimu6g03926 666 SUPERFAMILY Calponin-homology domain, CH-domain 121 619 IPR036872 -
Vimu6g03926 666 PANTHER FIMBRIN/PLASTIN 4 623 IPR039959 GO:0051015|GO:0051017
Vimu6g03926 666 SMART ch_5 395 497 IPR001715 GO:0005515
Vimu6g03926 666 SMART ch_5 125 238 IPR001715 GO:0005515
Vimu6g03926 666 SMART ch_5 270 369 IPR001715 GO:0005515
Vimu6g03926 666 SMART ch_5 516 620 IPR001715 GO:0005515
Vimu6g03926 666 FunFam Fimbrin-2 like 119 245 - -
Vimu6g03926 666 FunFam Fimbrin-2 like 389 506 - -
Vimu6g03926 666 Gene3D - 507 619 IPR036872 -
Vimu6g03926 666 ProSiteProfiles Calponin homology (CH) domain profile. 123 240 IPR001715 GO:0005515
Vimu6g03926 666 ProSiteProfiles Calponin homology (CH) domain profile. 393 499 IPR001715 GO:0005515
Vimu6g03926 666 MobiDBLite consensus disorder prediction 631 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03926 Vimu-Chr6 38726464 38733373 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03926 1 624 EF-hand Containing Proteins AT5G55400 65.016 0.0 859
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03926 - - gmx:100805133 1251.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03926 6 38726464 38733373 Vimu9g01479 9 23918975 23927273 PCT