Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01245 TTGTGTTGTGTTGTGTGGCACACCAAACTCACTACTCTTCAAGTGATGAAGGCTCTCAGCAGTTCTTGTTCTAAGGCCATCGTCGATACTCTAGGATCTTTGCCTCCCAGAGTTGCCATTCGTGTTTCTGATAGACCCGAATTCTTCCTCTCTCCGCGTCCAAGGAAAGAAAAGAAGGGTTGCAACTTATGGCTCCTCAAAGTTGTTCCCATCAAGGGCGTTTTTCCAGTTCATGCAGTTCCATCAAAAGACCAGGTGGACTTAGAAACTGCAGAACCTGAAGCGCAAAACAATGAACAAACAAATGAATCGAAGTTTGTTCGTGTAGCATTTGAGTTGCAAAAGTATTGTGACTTCGAAGAACAGTTTCTTATAGTTGGAGATGATCCTACGCTCGGTTCATGGGACCCTTTAGAAGCATTGCCGATGACATGGTCTGAAGGAGATGTATGGACTGCTGAGCAGGATATGCCTGTTGGAAAGTCAATCCAGTTCAAGTTCATATTGAAAGGAAAAGAGGGTGATATTATTTGGCAGCCAGGATCAGATAGAGTCATCCACACTTGGGAAACCGTGAAGACAATAACTGTTTGTGAAGATTGGGAGAATGCAGAACTTCGGAAAATAACAGAGGAAGATCAGCCTGCTGAACCGGATAAGGAACCCCAGATTGACTCTGAAGTGTCTGCTTCTGCTGAAATTTTGGATAACCCTCATAACGAACTGGATTCCAATGCATCTGAAATAACGGCTGTTGAGATACCACTTACTGCACCAGTCACTGATAATGGTATTGTTGCAGAAAATATAATTTCCCTTGAGGATCTCATCAAGAATACTAGCAGTAAATGGAATGAAAAGATTGAACCGAGTGAAGAATCAGCTGATAGTGCAGGAAATGATGATATAATTCTTGATCTTGGAAACAATGGAAGTGCTGCATCACTCGAGAATGATGAAGGGACAATTATGGAAAGCAGCTTATTATTTGATTTTGAAGGCGGTCCTGTTCTTGTACCTGGCTTAACTATACCAGCAACTGAGTCAACAAAGGCAAGCCAAGGTGAAAAAGTTATTCAAGAAAAGACTACCAAGGACATTTCAGTTGAAGGTTCTGAAACTGATCAGAATCAGAATCCACCCGAGTTCAGTAAGGAGCAAGATGGAATTCCCCAGGCAATGAATAATCAGGCAGAGCAAAATTATTTGTCCCCAGATACAGAAGTCAGTTCAAACTATGAACCAGAAGATGGCACTCCCTTGCAAAATCACATAAAAAGGGGCCAGGAAAGTGTAATGAAGATTCTTTCACTACTAGGATTACGTCGAGGGTCAAACTTTATGGAACCACTGGAATAA 1359 0.4202 MCCVVWHTKLTTLQVMKALSSSCSKAIVDTLGSLPPRVAIRVSDRPEFFLSPRPRKEKKGCNLWLLKVVPIKGVFPVHAVPSKDQVDLETAEPEAQNNEQTNESKFVRVAFELQKYCDFEEQFLIVGDDPTLGSWDPLEALPMTWSEGDVWTAEQDMPVGKSIQFKFILKGKEGDIIWQPGSDRVIHTWETVKTITVCEDWENAELRKITEEDQPAEPDKEPQIDSEVSASAEILDNPHNELDSNASEITAVEIPLTAPVTDNGIVAENIISLEDLIKNTSSKWNEKIEPSEESADSAGNDDIILDLGNNGSAASLENDEGTIMESSLLFDFEGGPVLVPGLTIPATESTKASQGEKVIQEKTTKDISVEGSETDQNQNPPEFSKEQDGIPQAMNNQAEQNYLSPDTEVSSNYEPEDGTPLQNHIKRGQESVMKILSLLGLRRGSNFMEPLE 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01245 452 Pfam Starch binding domain 107 194 IPR002044 GO:2001070
Vimu9g01245 452 Gene3D Immunoglobulins 104 202 IPR013783 -
Vimu9g01245 452 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 99 204 - -
Vimu9g01245 452 SMART CBM_20_2 106 198 IPR002044 GO:2001070
Vimu9g01245 452 MobiDBLite consensus disorder prediction 284 303 - -
Vimu9g01245 452 SUPERFAMILY Starch-binding domain-like 104 200 IPR013784 GO:0030246
Vimu9g01245 452 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 101 203 IPR002044 GO:2001070
Vimu9g01245 452 MobiDBLite consensus disorder prediction 364 426 - -
Vimu9g01245 452 FunFam Related to glucoamylase 99 203 - -
Vimu9g01245 452 MobiDBLite consensus disorder prediction 370 418 - -
Vimu9g01245 452 CDD CBM20 108 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01245 Vimu-Chr9 20335959 20338911 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01245 - - vra:106774358 746.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04449 6 49942161 49943829 Vimu9g01245 9 20335959 20338911 PCT