Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04449 ATGGCTCTCAACACCTCTTGCTCCAACCCCATTCTAGGAACCCATCTTCCTAACTCTGTTCCTAATGCTTCCAACACACCCAATTTTTTCTTCACCACCAATGACAACAAAGCCTGCAACTTTGGCTTCCCAAGACTTGTTCAAAACAAGGGTCTTCTCCCACTTCATGCAGTGCCATCCAAAACCATGGTTGATTTGGACAATTTGGTGCTCAAAACTCCAGAAGAACAACCGAAGGAAGAAGGAAAGATTATCAATGTCAAATTTCAGATGCATCGCAACTGTAAATTTGGGGAGCAATTTCTAGTAGTTGGTAGTGATCCGATGTTTGGCTCATGGAACCCTGCAAAAGCCATACCAATGGCCTGGTCAGAAGGGCATGTTTGGACGGCAGAGATGGCCGTACCTGCTGGAAAATTCCAGTACAAAATCATCTTGAAAAGAAGAAATGGTGACATTGTGTGGCAGCCAGGGCCAGATAGACTTGTTCAGACATGGGAAGCAATGAACAGAATCACTGTTTGTGAGGATTGGGAAAATTCCAAACTTCAGACAGTAACAGATGACGATGAGAAAGTTTCCAACACATCAGTGGAAGATGAACATGATCAGACAGATAAGGATTCCAAGATGGAGTCAGAAATTGCCAATTTGGCTGAGAATCGTTAG 669 0.4365 MALNTSCSNPILGTHLPNSVPNASNTPNFFFTTNDNKACNFGFPRLVQNKGLLPLHAVPSKTMVDLDNLVLKTPEEQPKEEGKIINVKFQMHRNCKFGEQFLVVGSDPMFGSWNPAKAIPMAWSEGHVWTAEMAVPAGKFQYKIILKRRNGDIVWQPGPDRLVQTWEAMNRITVCEDWENSKLQTVTDDDEKVSNTSVEDEHDQTDKDSKMESEIANLAENR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04449 222 PANTHER STARCH-BINDING DOMAIN-CONTAINING PROTEIN 1 83 181 - -
Vimu6g04449 222 Gene3D Immunoglobulins 82 179 IPR013783 -
Vimu6g04449 222 SUPERFAMILY Starch-binding domain-like 83 176 IPR013784 GO:0030246
Vimu6g04449 222 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 79 180 IPR002044 GO:2001070
Vimu6g04449 222 CDD CBM20 87 178 - -
Vimu6g04449 222 MobiDBLite consensus disorder prediction 185 222 - -
Vimu6g04449 222 SMART CBM_20_2 84 175 IPR002044 GO:2001070
Vimu6g04449 222 Pfam Starch binding domain 85 170 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04449 Vimu-Chr6 49942161 49943829 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04449 - - vun:114184232 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04449 6 49942161 49943829 Vimu6g04449 6 49942161 49943829 ECH
Vimu6g04449 6 49942161 49943829 Vimu9g01245 9 20335959 20338911 PCT