Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g04569 GGTGGCTATGAGATATTGGATGTGGAGGAAAAATCAGTGCTCGTGATTTATGAGGACGACGACGTCGACTACGACAACAACAACAACGAGGACGACAAGGACAATGTCAATGACCTTTTTGTAGAGAGTGGGGAGGAGAAATTCTCATTCGGAGAAGAACACGAGATAGACACAAAGCAGAGAACGGAAGTGGCCGTTTCAACGGCCACCTCCACGTCAGCATCAACGCCCTCTTCAATTGTTCTCGACTCCGAAAGCTCCACCGTTGAAAAACGGAAGATGCAGCAGAACATCTTCAACTCCATTCGTAGCATGAAAATCATGGACGCTTGTAAGGGCACGCAGGTCCACGCGCTCAAACCCTCCGCCGCCGCCGCCGATCGGAGCTCAGTCACTGCTGCTGATAAACTGCTGCATACTTCGTTCGACCATTCCAAAACCTCGGCCGGTCGAACCAAATCGGTTTCGACTACAGCTTCCAGACACGACGCCGTTTCGGAGACTCTTCTCCCGTGCGGGCTTCCAGCTTCCGAGCTTCTGGAACCTTCGATTGAGCTTTCCTTGAAGCCCTTGGACTTTGTGGAAACCCTCGCCCGCGTACATCGAAGGGCTGAGAGTTGCGCGGCGCTCGAGAAATCCGAGGTGTATTTGGAGCAATGCGCGGTGTTGCGTGGCCTGCCGGATCCGAAGCTGTTCCGCCGGGGGCTCCGTGAGGCTCGGAGGCACGCGGCCGAGGTGCACGCGAAGGTTGTGTTGGCTTCGTGGCTGAGGTATGAGCGGAGAGAGGATGAGCTTGTTGGATCGAATTCGATGGATTGCTGTGGAAGAAACCTTGAGTGTCCTAAGGCTAGTTTGGTCCCCGGGTATGATCATGAATCGGTGTTTGATCGTTGTACGTGTTTTCGTAGAGAGATAGTTAGTGATTGTGTTGTTCGTAGTCAGGAATGCGAACGAGAATGTTCCACTTCGAGTGAATATGTTGATGGTATTAGTGATCGTGATGCTGAAGATGATGATGTGTTTTTCTGCATTGGTGATAGTGAAATTAGTTGTAGGAGGTACTCTATGGCTGCACTTTCAAGGCCGTTTGAGACAATGTTGTGTGGTGGATTTCTTGAGTGTAGAAGGGAGAAGATAAATTTCTCTATGAATTGTGTTTCTGTTGAGGCAATGATGGCTGTTGAGGTTTTTAGTAGAACCAAGAGGCTGAGTGAGTTCCCTCCTAATGTTATTCTTGAGATGCTTTCTTTTGCGAACAAGTTTTGTTGTGAGGAGATGAAGCATGCTTGTGACACGCATTTGGCTTCTCTGGTTTTGGATATGGATGACGCGGTGTTGCTGATTGAGTATGGACTGGAGGAGACTGCATATCTGCTTGTGGCGGCTTGCTTGCAGGTGTTTCTGAGGGAGCTTCCTGGTTCGTTGCAGCGATGGAGTGTTATGAAGTTGTTTTGTAGTCCTGAGGGTAGGGATAGATTGGCCCTTGTGGGGCACGTGTCGTTTGTGCTGTATTATTTTTTGAGTCAGGTTGCGATGGAGGAAGAAATGAGGTCTAACATGACAGTGATGCTCTTGGAAAGATTGGGAGAGTGTGCGGTGGAGGGTTGGCAGAAACAACTTGCTTATCACCAATTGGGAGTTGTTATGCTTGAGAGAAAGGAATATAAAGATGCACAACGTTGGTTTGAGGCTGCTGTTGAGGCAGGACATATTTATTCTTTAGTGGGCGTTGCAAGGGCTAAGTATAAGCTTGGTCACATGTCTTCGGCATATGAGATGATAAACTCCCTAACAGAAAATTACAAACCAGCTGGTTGGATGTATCAGGAGAGGTCTTTGTATTGCACTGGGAAGGAGAAAATGTTGGACTTGCTCTCTGCAACTGAATTGGATCCAACTCTTTCTTTTCCATACAAATACAAGGCTGTTTCTTTGCTGGAGGAGAATAAGATTGGAGCTGCCATTTCTGAAATTGATAAAATAATTGGTTTCAAGGTCTCTCCGGACTGCCTTGAGTTGAGAGCTTGGTTTTTGATTGCTATGAAGGATTATGAAGGAGCCCTCAGAGATGTCAGGGCAATTTTGACGCTGGATCCAAATTATATGGTGTTCTATGGGAATATGCATGGTGGTCAGTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAGCCAGGCTGATTGCTGGATGCAATTGTATGACAGATGGTCATCTGTCGATGATATTGGTTCTTTGGCTGTTGTACACAAAATGTTGGAAAATGACCCTGGGAAAAGTATCTTACGCTTCCGGCAATCACTCCTTCTATTGAGGTTAAATTCTCAGAAGGCAGCCATGCGCAGTTTGCGTCTAGCAAGAAATCATTCATGTTCAGCACATGAAAGACTTGTCTATGAAGGATGGATATTGTATGACACTGGTTATCGTGAAGAAGCGTTGGCAAAAGCTGAGGAGTCCATTTCTATTCAACGGTCATTTGAAGCTTTCTTTCTCAAAGCTTATGCCCTAGCTGACTCGAGTCTTGATTCAGAGTCTTCGAAATATGTGATCAATCTCTTGGAGGAAGCACTTAGATGCCCCTCAGATGGTCTTCGCAAAGGACAAGCGCTGAATAATTTAGGAAGCGTATATGTAGATTGTGGCAAGTTGGACCTTGCTGCTGACTGCTACAAGCATGCACTTAACATCAAGCATACACGAGCACATCAAGGGTTGGCACGTGTATATCATCTTAAAGAACAGCACAAAGCTGCATATGATGAGATGACAAAACTGATAGCAAAGGCCAGGAATAATGCATCTGCATATGAGAAACGTTCAGAATATTGTGATCGTGACATGGCAAAGATTTTAATGGATGATCACAAGGAAGATGAAGCAATAGCGGAGCTTTCAAGGGCCATTGGTTTTAAGCCAGATTTGCAACTGTTACATCTTCGAGCAGCATTTCATGATTCAATGGGTGATTATATTTCTACCGTCCGAGATTGTGAAGCGGCCCTTTGTCTTGATCCTAGCCATGCTGAGACGTTAGAGCTTTGTAATAAAGCACGGGAGCGAATTAATGAACAAAAGTGA 3081 0.4628 GGYEILDVEEKSVLVIYEDDDVDYDNNNNEDDKDNVNDLFVESGEEKFSFGEEHEIDTKQRTEVAVSTATSTSASTPSSIVLDSESSTVEKRKMQQNIFNSIRSMKIMDACKGTQVHALKPSAAAADRSSVTAADKLLHTSFDHSKTSAGRTKSVSTTASRHDAVSETLLPCGLPASELLEPSIELSLKPLDFVETLARVHRRAESCAALEKSEVYLEQCAVLRGLPDPKLFRRGLREARRHAAEVHAKVVLASWLRYERREDELVGSNSMDCCGRNLECPKASLVPGYDHESVFDRCTCFRREIVSDCVVRSQECERECSTSSEYVDGISDRDAEDDDVFFCIGDSEISCRRYSMAALSRPFETMLCGGFLECRREKINFSMNCVSVEAMMAVEVFSRTKRLSEFPPNVILEMLSFANKFCCEEMKHACDTHLASLVLDMDDAVLLIEYGLEETAYLLVAACLQVFLRELPGSLQRWSVMKLFCSPEGRDRLALVGHVSFVLYYFLSQVAMEEEMRSNMTVMLLERLGECAVEGWQKQLAYHQLGVVMLERKEYKDAQRWFEAAVEAGHIYSLVGVARAKYKLGHMSSAYEMINSLTENYKPAGWMYQERSLYCTGKEKMLDLLSATELDPTLSFPYKYKAVSLLEENKIGAAISEIDKIIGFKVSPDCLELRAWFLIAMKDYEGALRDVRAILTLDPNYMVFYGNMHGGQLVELLRPVAQQWSQADCWMQLYDRWSSVDDIGSLAVVHKMLENDPGKSILRFRQSLLLLRLNSQKAAMRSLRLARNHSCSAHERLVYEGWILYDTGYREEALAKAEESISIQRSFEAFFLKAYALADSSLDSESSKYVINLLEEALRCPSDGLRKGQALNNLGSVYVDCGKLDLAADCYKHALNIKHTRAHQGLARVYHLKEQHKAAYDEMTKLIAKARNNASAYEKRSEYCDRDMAKILMDDHKEDEAIAELSRAIGFKPDLQLLHLRAAFHDSMGDYISTVRDCEAALCLDPSHAETLELCNKARERINEQK 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g04569 1026 Gene3D Tetratricopeptide repeat domain 901 1025 IPR011990 GO:0005515
Vimu6g04569 1026 SUPERFAMILY POZ domain 339 435 IPR011333 -
Vimu6g04569 1026 Coils Coil 913 940 - -
Vimu6g04569 1026 PANTHER ETO1-RELATED 100 1025 IPR044631 GO:0010105
Vimu6g04569 1026 Gene3D Tetratricopeptide repeat domain 827 900 IPR011990 GO:0005515
Vimu6g04569 1026 Pfam Tetratricopeptide repeat 869 897 IPR019734 GO:0005515
Vimu6g04569 1026 ProSiteProfiles TPR repeat profile. 868 901 IPR019734 GO:0005515
Vimu6g04569 1026 SUPERFAMILY TPR-like 540 789 IPR011990 GO:0005515
Vimu6g04569 1026 SMART BTB_4 338 438 IPR000210 GO:0005515
Vimu6g04569 1026 SUPERFAMILY TPR-like 854 1014 IPR011990 GO:0005515
Vimu6g04569 1026 Gene3D Tetratricopeptide repeat domain 536 826 IPR011990 GO:0005515
Vimu6g04569 1026 SMART tpr_5 868 901 IPR019734 GO:0005515
Vimu6g04569 1026 SMART tpr_5 975 1008 IPR019734 GO:0005515
Vimu6g04569 1026 SMART tpr_5 794 827 IPR019734 GO:0005515
Vimu6g04569 1026 SMART tpr_5 668 701 IPR019734 GO:0005515
Vimu6g04569 1026 Gene3D Potassium Channel Kv1.1; Chain A 333 475 IPR011333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g04569 Vimu-Chr6 51539840 51548671 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g04569 - - pvu:PHAVU_008G094700g 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g04569 6 51539840 51548671 Vimu6g04569 6 51539840 51548671 ECH
Vimu6g04569 6 51539840 51548671 Vimu9g01016 9 17072129 17076191 PCT