Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00168 ATGAACATGTGCACTGGTGCTGAATCTGGAGGAACTGTAGAAGGTAACCCCGTGAGGAAGTCAAAGGTTGGCCATGAGAAGCAGTTTTTTCATGACCTTCCTCAACAGTTACACAACCTTCTCAAGGAACTTTTCCCTACCCTTTCTCTCTCTGAGGTGAAAGAAGAGTTTAAATCACTGGCGAACATTGCATGTCCAATAATGGTGACGAACGTGCTTCTGTACTCACGATCTGCCATTTCGATGCTTTTCTTGGGTCGGCAAGGGAAAGTTGAGCTAGCTGGAGGAGCACTTGCAATAGGGTTTGCCAACATCACTGCAAATTCATTCCTCAAGGGTCTTACTATGGGAATGGATCCAATTTGTTGCCAAGCATATGGAGCAAAAAGATGGTCAGTTTTAAGCCAAACCTTCTTCAAAACCTTGTGTCTTCTCTTCCTTGTTGCCATCCCCATTTCACTACTATGGCTAAACATGGCCCCCCTCCTACACTGGCTAGGCCAAGACCCTGAAGTCACACGGGTTGCACAAGTTTACATGCTCTTCTCTATCCCTGAACTGCTTGCTCAAGTTCATCTCAATCCATTGAGGTCCTTCTTGAGAACACAAGGCTTGACAGCTCCACTAACTGTAGCTGCATCTTTTGCTGCCATTTTACACCTTCCAATAAATTACTTCTTTGCTACATATTTGAAATTAGGAGTGAAAGGCATTGCACTAGCCACAGGTTTGAACTCCATAAACATGATCCTAGGCTTAGTGCTTTATCTTCTCGTCTCAGAGAAACCTCTAAAACCTTGGGAAGGTGCCACTATTCTCTCTTCTTTTCGTGATTGGAGACCTTTGCTTACTCTAGCATTGCCAAGTTGCATCTCAGTGTGCTTGGAGTGGTGGTGTTATGAGATAATGCTCTTCCTATGTGGTTTGTTGAGTAATCCACAAACCACTGTTGCTACCATGGGTGTCCTCATTCAAACAACTGGGTTCCTATATGTATTCCCATTTTCATTGAGTGCTGCCTTGACAACACAAATCGGTCACTCACTAGGTGCAGGGCAACCCTTACGTGCACAAAGTACAGCCACAATAGGACTTTTCATAGCATTTGCATCAGGGGTCTCAGCCTTTGTTTTCTTGATGTTTGTGAGGAAAGTGTGGGGGAAACTATTCACAGCTGAGACACAAATTGTTGATATGGTCACAACCATACTTCCAATTTTGGGGTTGTGTGAGATTGGTAACTGGCCTCAAACTGCTGCATGTGGGATCTTATCAGGGACTGCACGCCCTTATGTGGGTGCAAGAATAAACCTGTTTGCATTTTACTTAATAGGGTTGCCAGTTGCAACTGCTTTCATGCACAGATACCAGCTGAGGGGTTTGTGGTTTGGCATGTTGGCTGCCCAAATTTCGTGTTTTTGTATGATGGTTTACACATTGATTCAAACAGATTGGGGGCATCAAAGTAAAAGAGCTGAGCAACTAGCTCGAAGAACACATGATGAGGAAAATGTAAATGATGATGGGGAATGTGGACTCCTTAATTCTGATTTATGA 1557 0.4393 MNMCTGAESGGTVEGNPVRKSKVGHEKQFFHDLPQQLHNLLKELFPTLSLSEVKEEFKSLANIACPIMVTNVLLYSRSAISMLFLGRQGKVELAGGALAIGFANITANSFLKGLTMGMDPICCQAYGAKRWSVLSQTFFKTLCLLFLVAIPISLLWLNMAPLLHWLGQDPEVTRVAQVYMLFSIPELLAQVHLNPLRSFLRTQGLTAPLTVAASFAAILHLPINYFFATYLKLGVKGIALATGLNSINMILGLVLYLLVSEKPLKPWEGATILSSFRDWRPLLTLALPSCISVCLEWWCYEIMLFLCGLLSNPQTTVATMGVLIQTTGFLYVFPFSLSAALTTQIGHSLGAGQPLRAQSTATIGLFIAFASGVSAFVFLMFVRKVWGKLFTAETQIVDMVTTILPILGLCEIGNWPQTAACGILSGTARPYVGARINLFAFYLIGLPVATAFMHRYQLRGLWFGMLAAQISCFCMMVYTLIQTDWGHQSKRAEQLARRTHDEENVNDDGECGLLNSDL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00168 518 NCBIfam MATE family efflux transporter 66 462 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu6g00168 518 CDD MATE_eukaryotic 56 491 IPR045069 GO:0042910|GO:1990961
Vimu6g00168 518 PANTHER MULTIDRUG RESISTANCE PROTEIN 52 485 - -
Vimu6g00168 518 Pfam MatE 288 449 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vimu6g00168 518 Pfam MatE 66 226 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00168 Vimu-Chr6 2287564 2290129 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00168 K03327 - gmx:100816717 905.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00168 6 2287564 2290129 Vimu9g00960 9 16113923 16119144 PCT