Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00140 ATGGCCAGCGTGAAGGTTGCATGCATGGTTGTAATGTGCATGGCTGTGATGAGTTCATCTGTGATGGTGCAGGCCATTACATGCAACCAAGTGACAGTGAGTCTGGCACCGTGCCTAGGTTACTTGATGAACGGTGGAGAGGCTGCACCAGGGTGCTGTAGCGGAGTAAAGAACGTTCTGGGTGCTGCCGGCAGCTCCGCTGACAAACAAACCGTGTGCAACTGTCTCAAAGATGCTGCTGGTAAGTATAACATCAATGCACAGTATGCTCAGGCACTCCCTGGCGTCTGCAAGGTCAATGTCCCTTATAAGATCAGCCGCTCCACCAACTGTGCAGAGTACGTTTAA 348 0.5172 MASVKVACMVVMCMAVMSSSVMVQAITCNQVTVSLAPCLGYLMNGGEAAPGCCSGVKNVLGAAGSSADKQTVCNCLKDAAGKYNINAQYAQALPGVCKVNVPYKISRSTNCAEYV 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00140 115 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 26 113 IPR036312 -
Vimu6g00140 115 PRINTS Plant phospholipid transfer protein signature 27 43 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 PRINTS Plant phospholipid transfer protein signature 47 61 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 PRINTS Plant phospholipid transfer protein signature 102 113 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 PRINTS Plant phospholipid transfer protein signature 68 83 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 PRINTS Plant phospholipid transfer protein signature 84 101 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 SMART aai_6 28 111 IPR016140 -
Vimu6g00140 115 PANTHER NON-SPECIFIC LIPID-TRANSFER PROTEIN 2-RELATED 5 112 IPR000528 GO:0006869|GO:0008289
Vimu6g00140 115 Pfam Protease inhibitor/seed storage/LTP family 28 111 IPR016140 -
Vimu6g00140 115 CDD nsLTP1 26 111 - -
Vimu6g00140 115 Gene3D - 25 114 IPR036312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00140 Vimu-Chr6 1823394 1823741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00140 4 111 Acyl Lipid Metabolism Gene Families AT2G38540 43.636 4.08e-26 92.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00140 - - gmx:100798112 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00140 6 1823394 1823741 Vimu9g00922 9 15181628 15182170 PCT