Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00906 ATGGGTAGAGCTGAAGTAATACCTGAGAACCCCCTTCAAGCAGTTCCTATCCTTTCAAGAGAAAGCAGTTTTTCATCTTCACCAAGAAGGTTGGAGGGCAAGGTTGCTATCGTAACAGGGGGTGCGAGAGGGATTGGTGAAGCCACAGTGCGAGTGTTCGTGAAGAACGGTGCGAGGGTGGTGATAGCGGATATCGAGGATGCACTTGGCGGGACACTGGCGGAGACCTTGGCCCCTTCAGCCACGTACGTGCACTGCGACGTTAGCGTGGAAGAAGAGGTTGAGAATTTGGTGAGTTCCACAGTTTCTCGGTACGGGCAAGTGGACATAATGTTCAACAATGCAGGGGTGTTGGGAAACCAGTCGAAGAACAAAAGCATTCTGAACTTTGACCCGAACGAGTTCGACAGTGTGATGCAAGTGAACGTGAAGGGCATGGCCTTGGGGATCAAGCACGCTGCAAGGGCCATGATTCCTAAGGGCATTGGGTGCATAATTTCCACTGCTAGTGTTGCTGGGGTGATGGGGGGTCTTGGCCCACATGCTTACACTGCCTCAAAGCATGCGATTGTGGGGCTAACCAAGAACACTGCTTGTGAGTTGGGGAGGTATGGGATAAGGGTGAATTGTATTTCCCCCTTTGGGGTGGCCACCAACATGCTTGTGAATGCTTGGAGAATAGGTGATTGTGATGAGGAAGGAGGTGATGATGATGAGGGTATGAATTTTGGGTTGCCATTTCAAGAGGAGGTGGAGAAAATGGAGGGGATTGTGAGAGGGCTTGCCAACTTGAAAGGACCAACTCTAAGACCCAAAGACATTGCTGAGGCTGCACTCTATCTTGCTAGTGATGAGTCCAAGTATGTTAGCGGTCATAATCTTGTTGTGGATGGTGGAGTCACCTCCTCAAGAAACTGCATCGGTTTGTAA 930 0.5022 MGRAEVIPENPLQAVPILSRESSFSSSPRRLEGKVAIVTGGARGIGEATVRVFVKNGARVVIADIEDALGGTLAETLAPSATYVHCDVSVEEEVENLVSSTVSRYGQVDIMFNNAGVLGNQSKNKSILNFDPNEFDSVMQVNVKGMALGIKHAARAMIPKGIGCIISTASVAGVMGGLGPHAYTASKHAIVGLTKNTACELGRYGIRVNCISPFGVATNMLVNAWRIGDCDEEGGDDDEGMNFGLPFQEEVEKMEGIVRGLANLKGPTLRPKDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00906 309 FunFam Short-chain dehydrogenase reductase 21 305 - -
Vimu9g00906 309 Pfam Enoyl-(Acyl carrier protein) reductase 254 301 - -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 106 117 IPR002347 -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 264 284 IPR002347 -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 204 221 IPR002347 -
Vimu9g00906 309 PRINTS Glucose/ribitol dehydrogenase family signature 183 202 IPR002347 -
Vimu9g00906 309 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 301 IPR036291 -
Vimu9g00906 309 Gene3D - 20 307 - -
Vimu9g00906 309 CDD secoisolariciresinol-DH_like_SDR_c 31 301 IPR045309 GO:0016616
Vimu9g00906 309 Pfam short chain dehydrogenase 34 223 IPR002347 -
Vimu9g00906 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 106 117 IPR002347 -
Vimu9g00906 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 183 202 IPR002347 -
Vimu9g00906 309 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 163 171 IPR002347 -
Vimu9g00906 309 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 27 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00906 Vimu-Chr9 14450846 14452496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00906 28 302 Miscellaneous Gene Families AT4G05530 33.808 5.06e-23 94.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00906 - - gmx:100790562 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00906 9 14450846 14452496 Vimu6g00084 6 1011905 1013592 PCT