Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00084 ATGATTGTCATGTCTGAGAAACCCCTTCAACCAGTTACTCAACAGGTTTCAGAAACTACCTTTTGTCCTTCTTCTAAGAGGTTGGAAGGCAAAATTGCTATTGTAACTGGGGGTGCTAGGGGGATAGGTGAAGCAACTGTGAGAGTTTTTGTGAAGCATGGTGCAAAGGTAGTGATTGCTGATGTTGAGGATGCAGCTGGAGCCATGCTTGCAGAGACACTGTCTCCTTCAGCCACCTATGTCCACTGCGATGTTAGCTTGGAGAAAGAGGTTGAAAACTTGGTTAGTTTCACAGTTTCTCGCTATGGACACCTTGACATCATGTTCAACAATGCTGGGGTGCTAGGGAACCAGTCAAAGAACAAGAGCATTGTGAACTTTGATCCTGATGAGTTTAACAGAGTCATGTGTGTGAATGTGAAGGGAGTGGCTCTGGGAATGAAGCATGCTGCAAGGGTGATGATTCCAAGAGGAGTAGGGTGCATAATCTCAACTTCCAGTGTTGCAGGGGTCATGGGGGGCCTGGGACCACATTCTTACACAGCCTCAAAGCATGCCATAGTTGGGCTTACAAAGAACACTTCTTGTGAGTTGGGGAAGTATGGGATAAGAGTAAACTGCATTTCACCATTTGGGGTGGCTACTTCCATGCTGGTGAATGCATGGAGGTCTTGTGAAGATGAAGAGGGTATCAATTTTGGGGTGCCCTTCCCAGAGGAGGTGGAGAAGATGGAGGAGTTTGTTAGAAGTCTTGCCAACTTGAGAGGAACAACTCTGAGGGCAGTGGACATTGCTGAGGCTGCACTTTATCTTGCTAGTGATGAATCCAAGTATGTCAGTGGCCACAATCTTGTTGTGGATGGTGGAGTCACTTCCTCAAGAAATTGTATTGGATTGTAA 900 0.4633 MIVMSEKPLQPVTQQVSETTFCPSSKRLEGKIAIVTGGARGIGEATVRVFVKHGAKVVIADVEDAAGAMLAETLSPSATYVHCDVSLEKEVENLVSFTVSRYGHLDIMFNNAGVLGNQSKNKSIVNFDPDEFNRVMCVNVKGVALGMKHAARVMIPRGVGCIISTSSVAGVMGGLGPHSYTASKHAIVGLTKNTSCELGKYGIRVNCISPFGVATSMLVNAWRSCEDEEGINFGVPFPEEVEKMEEFVRSLANLRGTTLRAVDIAEAALYLASDESKYVSGHNLVVDGGVTSSRNCIGL 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00084 299 CDD secoisolariciresinol-DH_like_SDR_c 27 291 IPR045309 GO:0016616
Vimu6g00084 299 Pfam Enoyl-(Acyl carrier protein) reductase 37 291 - -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 154 170 IPR002347 -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 180 199 IPR002347 -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 254 274 IPR002347 -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 103 114 IPR002347 -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 32 49 IPR002347 -
Vimu6g00084 299 PRINTS Glucose/ribitol dehydrogenase family signature 201 218 IPR002347 -
Vimu6g00084 299 Gene3D - 20 297 - -
Vimu6g00084 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 29 291 IPR036291 -
Vimu6g00084 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 103 114 IPR002347 -
Vimu6g00084 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vimu6g00084 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 180 199 IPR002347 -
Vimu6g00084 299 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 24 294 - -
Vimu6g00084 299 FunFam Short-chain dehydrogenase reductase 17 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00084 Vimu-Chr6 1011905 1013592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00084 5 290 Acyl Lipid Metabolism Gene Families AT1G24360 25.253 2.66e-23 95.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00084 - - gmx:100775210 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00084 6 1011905 1013592 Vimu6g00084 6 1011905 1013592 ECH
Vimu9g00906 9 14450846 14452496 Vimu6g00084 6 1011905 1013592 PCT