Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00872 ATGATGGACACCGCTTCATCTCCTTTGTCCCTCCAAAGCCAAAAGACAAGCTTCCAGGACCTTCCAGAAGCTTCCCCCAAGCCTTACAAGAAGGGCTTTGTGGCCACCCTAATGGGAGGAGCCTCCACTAATCCTTCCTTCAAAGAAGATAACTACTTTGTCTCCCTCCTCAGGTCCTCAGAGAAGAAAGCCCTTCAGGAGCTGAAGGAAAAGCTCAAAGCTTCCTTTGAAGACTCTCCCTCTGATGCCTCCATGTGGGGCATTCCCCTCCTTGGAGGTGATGACAAAGCTGATGTTATTCTGCTGAAGTTTCTTAGAGCAAGGGACTTCAGGGTTGGTGATGCCCTACACATGCTTGTAAAGTGTCTTGCTTGGAGGAAGGAGTTTGGTGCTGACATCATTTTGGAAGAGGATTTGGGGTTCAAGGAGCTTGAAGGAGTGATAGCGTATATGCAAGGGTATGACAAAGAGGGGCACCCTGTGTGCTACAATGCTTATGGGATGTTTAAGGACAAGGAAATGTATGAGAGGGTCTTTGGTGATGAGGAGAAGCTGAAAAAGTTCCTCAGGTGGAGGGTTCAAGTCCTCGAGAGAGGCATCAAGGTTCTTCATTTCAAGCCTGGCGGAGTCAATTCTCTCATTCAGGTCACAGACCTTAAAGACATGCCGAAGAGAGAGCTGAGGGTGGCTTCCAACCAGATCCTCTCCTTGTTCCAAGACAACTACCCGGAAATGGTGGCTCGCAAGATTTTCATCAACGTGCCATGGTACTTCAGCATGTTGTATTCAATGTTCAGTCCGTTTCTGACTCAGAGAACCAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCCGAGACACTGTACAAATTTATTAGGCCTGAGGATATTCCTGTTCAGTATGGAGGACTGAAACGGCCCAGTGATTTGCCGAATGGTCCCCCAAAACCTGCATCTGAGTTCACAATCAAAGGAGGAGAGAAAGTGAACATACAGATCGAAGGAATTGAGGCTGGTGCAACAATCACATGGGACATTGTAGTGGGAGGGTGGGACTTGGAATACAGTGCTGAGTTTGTGCCAAATGCTGAAGGAAGCTACATTATAGCAGTTGAAAAGCCAAGGAAGATGGGAGCCTCAGAAGAAGCAATCCACAACTCATTCACATCAAAAGAATCTGGAAAGATGGTACTCTCAGTTGATAACACTGCCTCAAGGAGGAAAAAGGTTGCTGCTTATCGCTATGTTGTCCGCAAAAGCAGCACCATTTAA 1275 0.4706 MMDTASSPLSLQSQKTSFQDLPEASPKPYKKGFVATLMGGASTNPSFKEDNYFVSLLRSSEKKALQELKEKLKASFEDSPSDASMWGIPLLGGDDKADVILLKFLRARDFRVGDALHMLVKCLAWRKEFGADIILEEDLGFKELEGVIAYMQGYDKEGHPVCYNAYGMFKDKEMYERVFGDEEKLKKFLRWRVQVLERGIKVLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSMLYSMFSPFLTQRTKSKFVISKEGNAAETLYKFIRPEDIPVQYGGLKRPSDLPNGPPKPASEFTIKGGEKVNIQIEGIEAGATITWDIVVGGWDLEYSAEFVPNAEGSYIIAVEKPRKMGASEEAIHNSFTSKESGKMVLSVDNTASRRKKVAAYRYVVRKSSTI 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00872 424 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 136 310 IPR001251 -
Vimu9g00872 424 Gene3D - 55 128 - -
Vimu9g00872 424 ProSiteProfiles GOLD domain profile. 286 420 IPR009038 -
Vimu9g00872 424 Gene3D GOLD domain 316 418 - -
Vimu9g00872 424 MobiDBLite consensus disorder prediction 1 27 - -
Vimu9g00872 424 FunFam SEC14 cytosolic factor family protein 145 320 - -
Vimu9g00872 424 SUPERFAMILY CRAL/TRIO N-terminal domain 59 138 IPR036273 -
Vimu9g00872 424 MobiDBLite consensus disorder prediction 1 21 - -
Vimu9g00872 424 Pfam CRAL/TRIO domain 145 304 IPR001251 -
Vimu9g00872 424 Gene3D - 136 315 IPR036865 -
Vimu9g00872 424 SUPERFAMILY CRAL/TRIO domain 142 307 IPR036865 -
Vimu9g00872 424 Pfam CRAL/TRIO, N-terminal domain 64 121 IPR011074 -
Vimu9g00872 424 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 321 420 IPR036598 -
Vimu9g00872 424 FunFam SEC14 cytosolic factor family protein 53 128 - -
Vimu9g00872 424 PANTHER PATELLIN-1 42 421 IPR044834 GO:0008289
Vimu9g00872 424 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Vimu9g00872 424 SMART sec14_4 143 307 IPR001251 -
Vimu9g00872 424 CDD SEC14 141 305 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00872 Vimu-Chr9 13704803 13708157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00872 101 299 Acyl Lipid Metabolism Gene Families AT1G55840 28.638 1.06e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00872 - - gmx:100809944 788.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00059 6 738975 741338 Vimu9g00872 9 13704803 13708157 PCT