Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00059 ATGCAAAAACTCCATCTGGGTCATCCCCATTCTCCGTCAATGGACACCACACCCTCTTCCACACCTTTCCAGGACCTTACAGAAGCTTCTCCAAAGCCTTCGAAGAAGACAACATTCACCTCCTTCATGACAGCCCCCTCTTTCAAAGAGGACACCTACTTCGTCTCCCACCTCAAACCCTCCGAAAAAAAGGCCCTTCAAGACCTTAGGGACAAACTCCTCGCCTCCTCGGACTCCTCCAACCCCGTTTCGATGTGGGGCGTGCCCCTGGTCGACGGCGGCGACAGAGGCGATGTGCTGCTCCTGAAGTTCCTCCGAGCGAGGGACTTCAGGGTCCACGACGCCCTTAACATGCTCCTCAAGTGCCTCGCGTGGAGGACCGAGTTCGGAGCTGACAACATTGTGGAGGAGGAGCTGGGATTCAAGGAGCTCGAAGGAGTGGTGGCATACACTCACGGGTACGATAGAGAGGGGCACCCTGTTTGCTACAATGCCTATGGGGTGTTCAAGGATAAGGAGATGTATGAGAGAGTGTTCGGGGATGAGGAGAAGCTGAAGAGGTTCTTAAGGTGGAGGGTTCAGGTTCTGGAGAGAGGGATGAAGATGCTTCACTTCAAACCCGGTGGGGTCAACTCTCTCATTCAGGTCACTGACCTCAAGGACATGCCCAAGAGAGAACTCAGGGTCGCTTCTAACCAGATACTCTCTCTCTTCCAAGATAACTATCCTGAAATGGTAGCTCGCAAGATTTTCATCAATGTGCCATGGTACTTCAGCTTGTTATATTCAATGTTCAGTCCGTTTCTGACCCAAAGAACCAAGAGCAAGTTTTTGATCTCTAAGGAGGGAAATGCTGCAGAGACACTCTACAAATTTATAAGGCCCGAGAATATTCCTGTTCGGTATGGTGGATTGAGTCGATCCAGCGATTTGGAGAATGGTCCCCCAAAACCTGCTTCTGAGTTCACAGTTAAAGGGGGAGAGAAAGTGAACATACAAATAGAAGGAATTGAGAGTGGTGCAACAATTACATGGGATATAGTGGTGGGAGGCTGGGAGCTGGAATACGGTGCTGAATTTGTCCCAATTGCAGAAGGTAGCTACACCTTAGCAGTTGATAAGGCAAGGAAGATTATGGCCACAGAAGAAGCAATCCACAACACTTTCACATCAAAAGAAGCTGGCAAAATGGTACTCTCTGTTGATAACTCTGCCTCAAGGAAGAAAAAAGTTGCTGCTTATCGCTATTTTGTGCGCAAATGCAGCAACACACCATCTTCAGAGCTTCAATTAAGCCTCAAATAA 1305 0.4897 MQKLHLGHPHSPSMDTTPSSTPFQDLTEASPKPSKKTTFTSFMTAPSFKEDTYFVSHLKPSEKKALQDLRDKLLASSDSSNPVSMWGVPLVDGGDRGDVLLLKFLRARDFRVHDALNMLLKCLAWRTEFGADNIVEEELGFKELEGVVAYTHGYDREGHPVCYNAYGVFKDKEMYERVFGDEEKLKRFLRWRVQVLERGMKMLHFKPGGVNSLIQVTDLKDMPKRELRVASNQILSLFQDNYPEMVARKIFINVPWYFSLLYSMFSPFLTQRTKSKFLISKEGNAAETLYKFIRPENIPVRYGGLSRSSDLENGPPKPASEFTVKGGEKVNIQIEGIESGATITWDIVVGGWELEYGAEFVPIAEGSYTLAVDKARKIMATEEAIHNTFTSKEAGKMVLSVDNSASRKKKVAAYRYFVRKCSNTPSSELQLSLK 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00059 434 MobiDBLite consensus disorder prediction 1 37 - -
Vimu6g00059 434 ProSiteProfiles GOLD domain profile. 286 420 IPR009038 -
Vimu6g00059 434 SUPERFAMILY CRAL/TRIO N-terminal domain 38 138 IPR036273 -
Vimu6g00059 434 MobiDBLite consensus disorder prediction 12 37 - -
Vimu6g00059 434 SMART CRAL_TRIO_N_2 97 122 IPR011074 -
Vimu6g00059 434 FunFam SEC14 cytosolic factor family protein 145 320 - -
Vimu6g00059 434 SMART sec14_4 143 307 IPR001251 -
Vimu6g00059 434 Pfam CRAL/TRIO domain 145 304 IPR001251 -
Vimu6g00059 434 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 321 428 IPR036598 -
Vimu6g00059 434 Gene3D - 130 315 IPR036865 -
Vimu6g00059 434 Gene3D - 55 128 - -
Vimu6g00059 434 SUPERFAMILY CRAL/TRIO domain 142 307 IPR036865 -
Vimu6g00059 434 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 136 310 IPR001251 -
Vimu6g00059 434 Gene3D GOLD domain 316 418 - -
Vimu6g00059 434 Pfam CRAL/TRIO, N-terminal domain 66 120 IPR011074 -
Vimu6g00059 434 CDD SEC14 141 305 IPR001251 -
Vimu6g00059 434 PANTHER PATELLIN-1 28 420 IPR044834 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00059 Vimu-Chr6 738975 741338 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00059 101 314 Acyl Lipid Metabolism Gene Families AT1G55840 28.125 7.92e-14 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00059 - - gmx:100814996 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00059 6 738975 741338 Vimu6g00059 6 738975 741338 ECH
Vimu6g00059 6 738975 741338 Vimu9g00872 9 13704803 13708157 PCT