Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00333 ATGAATGTTTGTATCTCAACAGCATCTTTGGTTGTGCTGCTGATTATGATTTCAGCAAACAGCTTGTGTTGTGAAGCACAACAGTGTCGTCCAAGTGGGAGAATCATAGGGAAGAAACCACCAGCAGGAGAATGCAACCAAGAGAATGATTCAGAGTGTTGTGTGGAAGGGAAGAGTTACACAACATACAAATGTTCTCCAGCAGTGTCAAGCAACACCATGGCACAACTCACTCTAAACAGTTTTGAAAAGGGTGGATGTTATTTAGACTTGGCTTCCTTTGTCTGTGGACCGGTCAGTCCGGTCGGGTTTTCTCGAAACGCCCCAAGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCAATGGCAACCAAGTTCGACGTAGAGAAGTTCAACGGTGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGTGGTGCCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACTATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGAAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAAAACCTTCGAGCATTTCAGGGATGCGATACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGAGTTCCAAAAACTTCAAGATTCAAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAATCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGTCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTGAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGATCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCTGTTAGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCAACTGTCATTGGTCATGTCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATGGGACACATCAGTGAGAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTGCTTCTGGGAGACAAACTACAGAAGCTGGATTTCTATGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACATTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCTGGTTCATGTTGCTGGGATCAAGGTTGTCAAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTTTATCTGATTAACAGGAGTCCGTCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGACTGATTACTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCTGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGCCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAAACGGTCGAACGATAGAGGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGATACAGATGGTATGTCTGGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGTTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATCTTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCCCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAACTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTAGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATATTGGACATTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGACGGTGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGTAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAGTGCTATTTGCAGAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAGCACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATATGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGGTACTGGATTGTCTTTCCAGAATAACTTTCAAGGTGAAGGTTTTGTTGATTCTGACTTTGCCAGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACTGCTGTTAGCTGGAGGTCTACACTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTATGGTTGAAAGGTTTGGTTCGGGAACTTGGTTTTGATCAGAAGTCTGTATGTGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGATTTATCATTCCAGAACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTGTTGTTGTCCAGGATTGGGTGTCTACCGGGTTTTCTCGAAACGCCCCAAGAACCCAACAGTGGAGATGGAGGAGGGCCTTCAGCATGTGACAACAAGTACCATTCTGATGATACACCAGTGGTTGCACTTTCCACCGGATGGTTTAACAACATGAGTAGGTGCCTCCACAATGTTACCATCACTGCAAATGGCAAAAGTGTTGTGGCCATGGTCGTTGACGAGTGTGACTCTACCATGGGATGTGATCAAGACCATGATTTTCAACCTCATTGTCCCAACAACATTGTTGATGCCTCCAAGGCTGTCTGGAAAGCCTTAGGTGTGCCTCACAATCAGTGGGGTGGACTGCAAATTACATGGGCTGATGCTTAA 4626 0.4665 MNVCISTASLVVLLIMISANSLCCEAQQCRPSGRIIGKKPPAGECNQENDSECCVEGKSYTTYKCSPAVSSNTMAQLTLNSFEKGGCYLDLASFVCGPVSPVGFSRNAPRTQQLAPTVGQGFKNSQGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMSGAMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIEVKLEDEDKAVILLNALPKTFEHFRDAILYGKDQVITLEEEFQKLQDSKTTEEGASGLISVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKVGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHVSVASGTENTARLWHLRMGHISEKGLEELEKQDLLLGDKLQKLDFYDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVWFMLLGSRLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPTDYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTPGGTEENQTGEGQVENGRTIEENRSDEFRTDLGDDTDGMSGEGSHGKAAGVDLRNYQLVRDRERRISKPTKRFGEADLICYALNAAEDLNRSDEPRSYKEALDSSDRHLWQGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKTRLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAILDIRTAFLHGDLEETIYMKQPDGFAKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHDGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLQKVISRYRMAESKMASTPVGQHLKLTKEQCPKTEEERKKMEYVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLSFQNNFQGEGFVDSDFARCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPGFLETPQEPNSGDGGGPSACDNKYHSDDTPVVALSTGWFNNMSRCLHNVTITANGKSVVAMVVDECDSTMGCDQDHDFQPHCPNNIVDASKAVWKALGVPHNQWGGLQITWADA 1541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00333 1541 Gene3D - 1432 1540 IPR036908 -
Vimu9g00333 1541 SUPERFAMILY Barwin-like endoglucanases 1433 1539 IPR036908 -
Vimu9g00333 1541 Pfam Integrase core domain 584 685 IPR001584 GO:0015074
Vimu9g00333 1541 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 963 1186 IPR013103 -
Vimu9g00333 1541 Pfam gag-polypeptide of LTR copia-type 181 311 - -
Vimu9g00333 1541 MobiDBLite consensus disorder prediction 833 888 - -
Vimu9g00333 1541 ProSiteProfiles Zinc finger CCHC-type profile. 346 362 IPR001878 GO:0003676|GO:0008270
Vimu9g00333 1541 MobiDBLite consensus disorder prediction 318 340 - -
Vimu9g00333 1541 SUPERFAMILY DNA/RNA polymerases 962 1382 IPR043502 -
Vimu9g00333 1541 Gene3D - 579 757 IPR036397 GO:0003676
Vimu9g00333 1541 PANTHER GAG-POL-RELATED RETROTRANSPOSON 497 1425 - -
Vimu9g00333 1541 Gene3D - 322 375 - -
Vimu9g00333 1541 ProSiteProfiles Integrase catalytic domain profile. 582 748 IPR001584 GO:0015074
Vimu9g00333 1541 SMART c2hcfinal6 346 362 IPR001878 GO:0003676|GO:0008270
Vimu9g00333 1541 Coils Coil 249 269 - -
Vimu9g00333 1541 Pfam GAG-pre-integrase domain 505 571 IPR025724 -
Vimu9g00333 1541 SUPERFAMILY Ribonuclease H-like 584 757 IPR012337 -
Vimu9g00333 1541 CDD DPBB_kiwellin-like 1437 1540 - -
Vimu9g00333 1541 SUPERFAMILY Retrovirus zinc finger-like domains 337 367 IPR036875 GO:0003676|GO:0008270
Vimu9g00333 1541 CDD RNase_HI_RT_Ty1 1276 1414 - -
Vimu9g00333 1541 MobiDBLite consensus disorder prediction 836 855 - -
Vimu9g00333 1541 MobiDBLite consensus disorder prediction 856 880 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00333 Vimu-Chr9 3959440 3964645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00333 928 1384 Receptor kinase-like Gene Family AT4G23160 36.214 1.68e-84 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00333 - - bna:106351154 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00333 9 3959440 3964645 Vimu9g00333 9 3959440 3964645 ECH
Vimu6g00492 6 5669264 5669839 Vimu9g00333 9 3959440 3964645 PCT