Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00290 ATGAAAATGATGAAGCCTTATGTCTGGCTTCAGACTTCAGATGATTCAATCCAACAAGTGGAACAAGAAATTGCAATGTTTTGCCCACTTATATGTCAAGAAATAATACAAAAAGGCATGGGATCTTCCAAGAACTGTGCAATATGTCTTCCTCAACAAGTCAGTCCTGCCATGTTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGCCGGTCAAACAAGGAACGTAAATCTTATGATGAGAAATTTGTTAGGATAGACACAGAGAGGCTTTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTAAAACCGTTAGTTGATCTAACCAGCCGTGCACTTGCTCGAATAATTGAAGGGAAGACGCCAGAGGAGATACGTGATATATTTCATTTGCCAGATGATCTTACAGAGAATGTTGAGGTTGAAGAAGAACATGTAGATGATCGTTCAGTTGATGACTTGTTGTCTTTTATCAATGGAAATGATGGAGGTAAATTAAACATATTAACCATCCTTATCTTTGTCTTCACTTAA 546 0.381 MKMMKPYVWLQTSDDSIQQVEQEIAMFCPLICQEIIQKGMGSSKNCAICLPQQVSPAMLSLILDYCRFHQVPGRSNKERKSYDEKFVRIDTERLCELTSAADSLQLKPLVDLTSRALARIIEGKTPEEIRDIFHLPDDLTENVEVEEEHVDDRSVDDLLSFINGNDGGKLNILTILIFVFT 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00290 181 SMART skp1_3 5 106 IPR001232 GO:0006511
Vimu9g00290 181 SUPERFAMILY POZ domain 6 70 IPR011333 -
Vimu9g00290 181 SUPERFAMILY Skp1 dimerisation domain-like 80 146 IPR036296 GO:0006511
Vimu9g00290 181 Pfam Skp1 family, dimerisation domain 107 146 IPR016072 GO:0006511
Vimu9g00290 181 Pfam Skp1 family, tetramerisation domain 8 70 IPR016073 GO:0006511
Vimu9g00290 181 Gene3D Potassium Channel Kv1.1; Chain A 2 154 IPR011333 -
Vimu9g00290 181 FunFam SKP1-like protein 21 isoform X1 2 151 - -
Vimu9g00290 181 PANTHER SKP1 4 148 IPR016897 GO:0006511
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00290 Vimu-Chr9 3549666 3553264 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00290 - - gmx:100794666 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00290 9 3549666 3553264 Vimu9g00290 9 3549666 3553264 ECH
Vimu9g00290 9 3549666 3553264 Vimu6g00537 6 6575667 6581616 ECH
Vimu6g00537 6 6575667 6581616 Vimu9g00290 9 3549666 3553264 PCT