Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00537 ATGGTTTCAGGGATGATGAAGCCTTATATCTGGCTTGAGACATCAGATGGTTCAATCCAGCAAGTGGAACAAGAAATTGCAATGTATTGCCCTTTAATTTGTAAAGAAATAATACAAAAAGGGATGGGATCTTCCAAGAATTGTGCAATATGTCTTCCTCAACGAGTCAGTCCTGCAACATTGAGCTTAATTCTTGATTATTGTCGTTTTCATCAAGTACCAGGTCGCTCAAACAAGGAAAGGAAGTCTTATGATGAAAAGTTTGTTAGGATGGACACAAAGCGTCTGTGTGAGTTGACATCTGCTGCAGACAGCCTTCAGTTGAAGCCATTGGTTGATCTTACAAGTCGTGCACTTGCCCGGATAATTGAGGGAAAATCTCCAGAGGAGATACGTGAAATATTTCATCTGCCTGATGATCTAACTGAGGAAGTAAATGGTCAAAACATCAGACATCCAGATTCTGAAGCTGATATAATTGCCGAGACTTCAATTTCACATACAGAAAATGTTTTTCCTCATAAGGAGTTTGATGATGGAGATATAGATGATGGGATTGATCCTGCACTTAAGGAAAAAATTGACAGGTATAAAAGCAAACCTTATGTGTTTGGTAACCATTTTGAGCACAGGGAAGTCGAAGATTTTGCCCGACGATTGAATTCTGACTGGCCAGAGAGGATGCAAGAACTTTTATCGTCTGGACAAGAAAGGAAGACGAGACTTTTTAGTCCCAATGGAAATAGTTTTCTACGGCGAAATGCTTGTATGTTTTTTCACTGTTTATGA 789 0.3929 MVSGMMKPYIWLETSDGSIQQVEQEIAMYCPLICKEIIQKGMGSSKNCAICLPQRVSPATLSLILDYCRFHQVPGRSNKERKSYDEKFVRMDTKRLCELTSAADSLQLKPLVDLTSRALARIIEGKSPEEIREIFHLPDDLTEEVNGQNIRHPDSEADIIAETSISHTENVFPHKEFDDGDIDDGIDPALKEKIDRYKSKPYVFGNHFEHREVEDFARRLNSDWPERMQELLSSGQERKTRLFSPNGNSFLRRNACMFFHCL 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00537 262 Pfam Skp1 family, tetramerisation domain 9 72 IPR016073 GO:0006511
Vimu6g00537 262 PANTHER SKP1 6 150 IPR016897 GO:0006511
Vimu6g00537 262 SUPERFAMILY Skp1 dimerisation domain-like 79 142 IPR036296 GO:0006511
Vimu6g00537 262 SUPERFAMILY POZ domain 8 72 IPR011333 -
Vimu6g00537 262 Pfam Skp1 family, dimerisation domain 109 144 IPR016072 GO:0006511
Vimu6g00537 262 Gene3D Potassium Channel Kv1.1; Chain A 4 155 IPR011333 -
Vimu6g00537 262 SMART skp1_3 7 108 IPR001232 GO:0006511
Vimu6g00537 262 FunFam SKP1-like protein 21 isoform X1 4 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00537 Vimu-Chr6 6575667 6581616 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00537 - - gmx:100809439 280.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00537 6 6575667 6581616 Vimu6g00537 6 6575667 6581616 ECH
Vimu9g00290 9 3549666 3553264 Vimu6g00537 6 6575667 6581616 ECH
Vimu6g00537 6 6575667 6581616 Vimu9g00290 9 3549666 3553264 PCT