Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00284 ATGTCTTCTCCAAGCAAGCGGCGAGAGATGGACTTGATGAAACTGATGATGAGTGACTACAAGGTGGAGATGATTAATGATGGAATGCAAGAGTTTTATGTGCATTTCCATGGACCCAATGAGAGTCCTTATCATGGAGGTGTGTGGAAAGTAAGAGTTGAGCTGCCAGAAGCTTATCCTTATAAATCTCCTTCCATAGGGTTTATCAATAGGATCTATCACCCAAATGTTGATGAGATTATATGCATTCCTTCAGATCTTGTCAATGTGTTTGAGGTGTTTTTACCACAACTTCTTCTGTATCCTAATCCATCTGACCCCTTAAATGGAGAAGCTGCTGCTTTACTGATGCGTGATCGAGCCAGTTATGAACAAAAGGTTAAAGAATACTGTGAGAAGTATGCTAAACCTGAGGACATAGGAGCTGCAACAGAAGAGCAATCCAGTGATGAGGAGCTAACTGAAGATGAAGATGATTCTAGTGATGAACAGGTTGCTGGTAAGGCAGATCCCTAG 516 0.4167 MSSPSKRREMDLMKLMMSDYKVEMINDGMQEFYVHFHGPNESPYHGGVWKVRVELPEAYPYKSPSIGFINRIYHPNVDEIICIPSDLVNVFEVFLPQLLLYPNPSDPLNGEAAALLMRDRASYEQKVKEYCEKYAKPEDIGAATEEQSSDEELTEDEDDSSDEQVAGKADP 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00284 171 MobiDBLite consensus disorder prediction 144 163 - -
Vimu9g00284 171 Gene3D Ubiquitin Conjugating Enzyme 1 149 IPR016135 -
Vimu9g00284 171 SUPERFAMILY UBC-like 4 136 IPR016135 -
Vimu9g00284 171 CDD UBCc 7 131 IPR000608 -
Vimu9g00284 171 FunFam Ubiquitin-conjugating enzyme 5, E2 1 147 - -
Vimu9g00284 171 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 29 124 - -
Vimu9g00284 171 Pfam Ubiquitin-conjugating enzyme 10 130 IPR000608 -
Vimu9g00284 171 SMART ubc_7 4 136 - -
Vimu9g00284 171 MobiDBLite consensus disorder prediction 138 171 - -
Vimu9g00284 171 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 136 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00284 Vimu-Chr9 3446061 3448696 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00284 K10576 - gmx:548025 299.286
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00284 9 3446061 3448696 Vimu9g00284 9 3446061 3448696 ECH
Vimu6g00553 6 6707171 6709254 Vimu9g00284 9 3446061 3448696 PCT