Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00553 ATGATGAGTGATTACAAGGTGGAGATGATTAATGATGGAATGCAAGAATTTTATGTGCAATTCCATGGACCCAATGACATTATTGATTTCACCTTTGATTGTTGTTTCGGCCTGGTTTTTGATCCTTATCAATATTTCTGTATCATGGAGCTTCCTTTTCCTATAGTCTTCTTATCTGTTGGATGGCTTTTGGCAGGTCCTTATCATGGTGGTGTGTGGAAAGTGAGAGTTGAGTTGCCTGATGCCTATCCTTATAAATCTCCTTCCATTGGCTTTGTCAACAAGATCTATCACCCAAATGTTGATGAGATGTCAGGATCAGTTTGTCTGGATGTTATCAATCAAACCTGGAGTCCCATGTTTGATCTTGTTAATGTGTTTGAGGTGTTTCTACCACAACTTCTGCTGTATCCCAATCCATCAGACCCCTTGAATGGAGAAGCTGCGGCTTTAATGATGCGTGACCGATCTGCTTATGAGATAAGGGTTAAAGAGTACTGTGAGAAGTATGCTAAGCCTGAAGACATAGGGGAAGTCACTGAAGAGAAATCCAGTGATGAGGAGATGAGTGAAGATGAATCTGATTCTAGTGATGAGCAGGTTGTTGGTAAAGCAGACCCCTAG 624 0.4119 MMSDYKVEMINDGMQEFYVQFHGPNDIIDFTFDCCFGLVFDPYQYFCIMELPFPIVFLSVGWLLAGPYHGGVWKVRVELPDAYPYKSPSIGFVNKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFEVFLPQLLLYPNPSDPLNGEAAALMMRDRSAYEIRVKEYCEKYAKPEDIGEVTEEKSSDEEMSEDESDSSDEQVVGKADP 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00553 207 Gene3D Ubiquitin Conjugating Enzyme 63 186 IPR016135 -
Vimu6g00553 207 SMART ubc_7 29 172 - -
Vimu6g00553 207 FunFam ubiquitin-conjugating enzyme E2 H isoform X2 63 183 - -
Vimu6g00553 207 MobiDBLite consensus disorder prediction 180 196 - -
Vimu6g00553 207 MobiDBLite consensus disorder prediction 174 207 - -
Vimu6g00553 207 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 97 113 IPR023313 -
Vimu6g00553 207 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 172 IPR000608 -
Vimu6g00553 207 Pfam Ubiquitin-conjugating enzyme 66 166 IPR000608 -
Vimu6g00553 207 CDD UBCc 1 167 IPR000608 -
Vimu6g00553 207 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 66 160 - -
Vimu6g00553 207 SUPERFAMILY UBC-like 66 172 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00553 Vimu-Chr6 6707171 6709254 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00553 K10576 - gmx:100805356 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00553 6 6707171 6709254 Vimu6g00553 6 6707171 6709254 ECH
Vimu6g00553 6 6707171 6709254 Vimu9g00284 9 3446061 3448696 PCT