Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00143 TTAGGTTATAGAATAGTTTTTCCATTTATGGCTTCGGAGAATGTGAAGACTGGGGATTCTGCCGTCACCACCATCGTCAACCTCGCCGAGGAAGCCAAGCTCGCCCGAGAAGGCGTTGTCAAGGCTCCCAACTACGCGCTCGCCAGCATCTGCAAGTCACTTGTCGCGGGTGGCGTCGCCGGAGGAGTGTCACGTACTGCAGTTGCTCCTCTGGAACGGTTGAAAATTTTGCTACAGGTCCAAAACCCTCATAACATTAAATACAATGGAACCATACAAGGCCTAAAATATATATGGAGAACTGAAGGTCTCCGTGGACTTTTCAAAGGGAATGGTACTAACTGTGCTCGAATTGTCCCTAACTCTGCTGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGTACATGTATCGGCAGCAAACTGGAAATGAGGATGCTCAACTGACTCCTGTTTTACGTCTTGGAGCTGGAGCTTGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGACATGGTTCGTGGCCGTATTACTGTGCAGACTGAGGCATCCCCATATCAGTACAGAGGAATGTTTCATGCTTTGTCTACTGTGCTTAGGGAAGAAGGTCCCCGTGCTTTATATAAGGGCTGGCTTCCTTCAGTTATTGGAGTTATTCCTTATGTAGGTCTCAACTTTGCTGTGTACGAGTCTCTAAAAGATTGGTTAATTAAATCCAACGCATTTGGTCTTGCTGATAATTCTGAGTTGGGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACTGTTGGACAAACAGTTGCTTACCCTCTTGACGTTATTCGTAGAAGAATGCAGATGGTTGGTTGGAACCATGCTGCTTCTGTTCTAACTGGTGATGGAAGAGTCAAAGTCCCGCTTGAATACACTGGAATGATTGATGCATTCAGGAAAACTGTTCAGCATGAAGGATTCGGTGCATTATACAAGGGTCTTGTGCCCAACTCTGTAAAGGTGGTCCCATCGATAGCTATCGCTTTTGTGACATACGAGATGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTGA 1095 0.4575 LGYRIVFPFMASENVKTGDSAVTTIVNLAEEAKLAREGVVKAPNYALASICKSLVAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGLRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILYMYRQQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEASPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLIKSNAFGLADNSELGVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWNHAASVLTGDGRVKVPLEYTGMIDAFRKTVQHEGFGALYKGLVPNSVKVVPSIAIAFVTYEMVKDILGVEIRISD 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00143 364 PANTHER SOLUTE CARRIER FAMILY 25 48 358 - -
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 212 230 IPR002067 GO:0055085
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 53 66 IPR002067 GO:0055085
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 110 130 IPR002067 GO:0055085
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 263 285 IPR002067 GO:0055085
Vimu9g00143 364 PRINTS Mitochondrial carrier protein signature 66 80 IPR002067 GO:0055085
Vimu9g00143 364 Gene3D Mitochondrial carrier domain 46 358 IPR023395 -
Vimu9g00143 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 254 355 IPR018108 -
Vimu9g00143 364 SUPERFAMILY Mitochondrial carrier 49 351 IPR023395 -
Vimu9g00143 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 48 135 IPR018108 -
Vimu9g00143 364 ProSiteProfiles Solute carrier (Solcar) repeat profile. 151 239 IPR018108 -
Vimu9g00143 364 Pfam Mitochondrial carrier protein 151 243 IPR018108 -
Vimu9g00143 364 Pfam Mitochondrial carrier protein 49 135 IPR018108 -
Vimu9g00143 364 Pfam Mitochondrial carrier protein 253 356 IPR018108 -
Vimu9g00143 364 FunFam Mitochondrial substrate carrier 46 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00143 Vimu-Chr9 1732580 1736864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00143 3 359 EF-hand Containing Proteins AT5G51050 36.740 1.06e-67 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00143 K14684 - gmx:100814032 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00143 9 1732580 1736864 Vimu9g00143 9 1732580 1736864 ECH
Vimu2g01577 2 11076760 11081547 Vimu9g00143 9 1732580 1736864 PCT