Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01577 ATGGCTTCGGAGACAAAGATCGTGAATCTGGCCGAGGAAGCCAAGCTAGCCAGGGAAGGTGTTAAGACTCCCTCCTATGCTTTTACTACCATCTGCAAGTCCCTCGTCGCCGGTGGAGTCGCCGGAGGAGTGTGCGTCTCATTTCTTCAACTTTTCTTTCTTCTTTTCGGAAATACACAACCCGACATATGCGTGCGTCTATTCTCGGGAGTAATGAGGCGCTTATCACGAACAGCAGTTGCTCCACTGGAAAGGTTGAAGATTTTGCTACAGGTTCAGAATCCACACAATATAAAATACAATGGAACGATTCAAGGTCTGAAATATATATGGAGAACTGAAGGTTTTCGTGGGCTGTTCAAAGGGAATGGAACTAATTGCGCTCGAATTGTCCCCAATTCTGCGGTGAAGTTCTTCAGTTATGAGCAAGCTTCTAAGGCTATACTACAACTGTATCAGAAGCAAACTGGAAACGAGGATGCTCAGCTGACTCCTGTTTTACGTCTTGGAGCTGGAGCTTGTGCGGGAATAATTGCTATGTCTGCAACTTACCCGATGGACATGGTTCGAGGCAGAATAACTGTACAGACAGAGAAGTCCCCTTACCAATACAGAGGAATGTTTCATGCTCTGTCAACTGTACTCAGAGAAGAAGGTCCACGTGCTTTGTATAAGGGATGGCTTCCTTCAGTCATTGGAGTTATTCCTTATGTGGGTCTCAACTTTGCTGTTTATGAGTCTTTGAAAGATTGGTTAGTTAAATCCAATCCATTTGGTCTAGTTCAAGATTCTGAGCTGAGTGTGACAACTCGCCTGGCTTGTGGTGCTGCAGCTGGAACTATGGGACAAACCGTTGCTTACCCTCTTGATGTCATTCGACGAAGAATGCAGATGGTGGGTTGGAACCACGCTGCTTCTGTCGTAGCTGGTGATGGAAGAGGAAAGGTTCCGCTTGAATACAGTGGCATGATTGATGCCTTTAGGAAAACTGTTCGGTATGAAGGATTTGGTGCATTATACAAGGGTCTGGTGCCGAATTCTGTAAAGGTGGTCCCATCCATAGCAATCGCGTTTGTAACATATGAGGTGGTGAAGGACATTTTAGGCAGGGGGATGCTCAGAGATGATAACTTAGGGTTACTTTCTTGGTTTACATCTCTTCATTGA 1167 0.455 MASETKIVNLAEEAKLAREGVKTPSYAFTTICKSLVAGGVAGGVCVSFLQLFFLLFGNTQPDICVRLFSGVMRRLSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKAILQLYQKQTGNEDAQLTPVLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSNPFGLVQDSELSVTTRLACGAAAGTMGQTVAYPLDVIRRRMQMVGWNHAASVVAGDGRGKVPLEYSGMIDAFRKTVRYEGFGALYKGLVPNSVKVVPSIAIAFVTYEVVKDILGRGMLRDDNLGLLSWFTSLH 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01577 388 Gene3D Mitochondrial carrier domain 65 370 IPR023395 -
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 78 92 IPR002067 GO:0055085
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 275 297 IPR002067 GO:0055085
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 65 78 IPR002067 GO:0055085
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 122 142 IPR002067 GO:0055085
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 178 196 IPR002067 GO:0055085
Vimu2g01577 388 PRINTS Mitochondrial carrier protein signature 224 242 IPR002067 GO:0055085
Vimu2g01577 388 SUPERFAMILY Mitochondrial carrier 66 363 IPR023395 -
Vimu2g01577 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 163 251 IPR018108 -
Vimu2g01577 388 Pfam Mitochondrial carrier protein 75 148 IPR018108 -
Vimu2g01577 388 Pfam Mitochondrial carrier protein 265 369 IPR018108 -
Vimu2g01577 388 Pfam Mitochondrial carrier protein 163 255 IPR018108 -
Vimu2g01577 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 60 147 IPR018108 -
Vimu2g01577 388 PANTHER SOLUTE CARRIER FAMILY 25 70 369 - -
Vimu2g01577 388 FunFam Mitochondrial substrate carrier 60 370 - -
Vimu2g01577 388 ProSiteProfiles Solute carrier (Solcar) repeat profile. 266 367 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01577 Vimu-Chr2 11076760 11081547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01577 171 381 EF-hand Containing Proteins AT5G51050 27.358 1.24e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01577 K14684 - gmx:100777048 629.787
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01577 2 11076760 11081547 Vimu9g00143 9 1732580 1736864 PCT