Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00098 ATGGCACCAAGAAACAGTCGCGCAAAGGCCAAGGGTGAGAAGAAAAAGAAGGACGAAAAGGTTCTCCCAGTTGTCATAGACATCACAGTGAAGCTTCTAGATGAAACTCATGTTCTCAAGGTAAGAGGGCCACGTCTGAAGGACATGGTGGACGTGTCCGCACTGAAGCCCTGCCTCCTGACTTTAGTTGAAGAGGAATACAATGAAGAAAGATCAGTGGAGCACGTGCGAAGACTCCTTGACATCGTTGCCTGCACCACGAGCTTTGGTCCGTCGCCGCCTCCGCCACCGAAGAACGCGGCCGGCACTGTCACGAAGTCCGGCAAGTCCGAGATCCCGCCGGCGAAAGATGCGGCGGTGACGGTTGCGGACGTGGACGGCGAGATAAGCCACTCGTGCCCTAAGCTGGAGAACTTCTACGAGTTTTTCTCTCTTTCGCATCTCACCGCACCTATACAATGTGCTACTCTTAACTCAGTTCTCTTTCTTTCGCACTCTTCTGTGATTAATTGCATTACTGTGGCATGTGAAGAAAGGTTCGAGGCGGCGTGTGGAGGAGATATCGGAGGAGGATTATCTGTTCTCGCTGGATGTGAGGATTTTGTGAAGGTGTGCAACGGGAAAGTGGTGCACGTTGAGGCTTGCAGAAAGGGTTTCTACAGCGTTGGGAAGCAGCGGATTCTGTGCCATAATCTGGTTGATTTGTTGAGACAGCTTAGCAGAGCTTTCGATACTGCTTTCGATGATCTCTTGAAGGCATTTTCAGAGCGTAACAAGTTTGGGAATCTCCCATATGGCTTCAGAGCCAACACGTGGCTTGTTCCTCCGGTTGCTGCACAGTTACCCTCATCTTTTCCTCCTCTTCCTGTGGAGGATGAAACATGGGGAGGGAATGGTGGTAGTCTCGCAAAAGACGGAAAGTATGATTTGGTTCCTTGGGCCAAAGAGTTTTCATTAATTGCGTCTATGCCTTGCAAGACAGCAGAAGAAAGACAAGTTCGTGATAGAAAAGCATTTCTTCTGCACAGCCTGTTTGTTGATGTTTCTATTTTCAGAGCAATAAGGGCTGTTAAACATGTTATGGAAGAGCCCAATTTTAGTTGCTCCGTTGTAGAAAATAATATTGTTTACACTGAGAGAGTAGGTGACTTGAGCATCAAGGTCTTGGAAAATGGTTCTGTTGCAAGCTCTAAGATTGATACTAAAATTGATGGAGTTGAAGCTACTGGAGTAAATCAAAAGGATCTAATAGAGCGAAATCTACTGAAAGGCATCACTGCGGATGAAAATACTGCTGCCCATGATATTACCACTTTAGGTGTCGTTAATGTAAGATACTGTGGTTATGTGGTCGTTGTGAAAGTTGAGGTTGAAGTTAGGGAAAATGTTGACTCTCCATCTCAACAAACTATTGAATTGTTTGATCAGCCAGAGGGTGGGGCCAATGCACTCAATATTAACAGTCTGAGATTACTTCTTCACAACACAACTCCACCAGAAAACAATAAACCAATGATTCAAATACAAACGTTTGAGAGTGAAGAGATTGGTGCTTCTCATTCTTTTGTGGAGAGGCTGATTAAAGAAAGTCTTGCAAAGCTTGAGGAGGAAGAACCTGGTATGGACTATTTTGTAAGATGGGAACTTGGAGCTTGCTGGATGCAACATTTGCAAGACCAAAATAATAATACAGAAAAAGATAAGAAACCATCCTTGGAGAAGGCTAAGAATGAGATGAAGGTTGAGGGTCTTGGGAAACCCCTTAAAGCCCTAAAGAATTATAAAAAGAAATCTGATTCAAGCAATACTACTTCTGCATCTGAATATCCAAAATTTAGTCGGGAGTCTAAAAGCCCTCCATTGCCCTCAATTGAGTCGCAACATGAAACTACAGAAGCTGAGAATGAGCTTGTTCTGAAAAGCATGTTATCTGAGGAAGCTTTTACCCGATTTAAGGAATCGGGAACTGGACTTCACTGCAAGTCTATGCATGATTTGATTGACTTATCTCAAAAATATTACAAAGACGTTGCACTCCCAAAATTGGTAGCAGATTTTGGCTCATTAGAACTCTCACCAGTTGATGGACGCACTCTAACTGATTTTATGCATACTAGGGGCCTACGAATGCGTTCTCTTGGACATGTTGTCAAGCTTTCAGAAAAGCTTTCACATGTGCAGTCGCTTTGTATTCATGAAATGATAGTTCGAGCTTTTAAGCACATCCTGCGTGCAGTAATTTCTTCTGTTAACAAGGAGAAAATGGCTTCATCAATTGCTGGTGCTTTGAATTTTCTGCTCGGTGTTCCTGGAAGCAGAGATTCAGATAAATCACATGAAGTTCATCCCTTGGTGTGGAAATGGCTAGAGGTATTTTTGAAAAAGCGATTTGATTGGGATCTTCACAGGTTGAATTACAAAGATGTGAGGAAATTTGCAATTTTACGTGGCTTGTGTCACAAGGTGGGAATTGAGCTTGTTCCACGGGATTTTGATATGGATTCTTCTATTCCCTTCCACAAATCTGATATTGTTAGCTTGGTCCCTGTTCACAAGCAAGCTGCATGCTCATCTGCAGATGGAAGGCAGCTCCTGGAGTCATCCAAGACTGCTTTAGACAAGGGAAAGCTTGAGGACGCCGTTACCTATGGCACTAAGGCTCTTGCTAAGCTAGTAGCAGTTTGTGGTCCCTACCATCGAATGACAGCCGGAGCATACAGCCTCCTTGCTGTAGTTTTATATCATACTGGAGACTTCAATCAGGCTACAATATATCAACAAAAAGCTTTGGATATCAATGAGAGAGAGTTAGGTCTGGATCATCCTGATACCATGAAGAGCTATGGGGATCTTGCTGTTTTCTATTACAGACTACAGCACACAGAGCTGGCTCTGAAGTATGTAAAGCGTGCTTTATATCTTCTGCATCTAACATGTGGCCCATCTCATCCAAATACTGCTGCTACTTACATCAATGTGGCTATGATGGAAGAAGGTCTGGGAAATGTACATGTCGCTCTCAGATATCTTCACAAAGCTTTAAAGTGCAACCAAAGATTACTTGGCGCAGATCATATTCAGACAGCTGCAAGTTATCATGCAATAGCAATAGCACTCTCATTGATGGAAGCATATCCATTGAGCGTGCAGCATGAGCAAACAACTTTGCAAATTCTGAGGTCAAAACTTGGTCCTGATGACTTGCGAACACAGGATGCTGCGGCTTGGCTGGAGTATTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCTCGAAATGGTACTCGGAAACCTGATGCATCAATAGCTAGCAAAGGCCATTTAAGGTACAATTTGCTTGACTATATTAATCCTGATCATGATGCTAAAGGGAGAGATGCAGCAACAAAGAGAAGGAGCCAGATAACAAAGGTGAGAGCGACGTCCTACCTTAACCTTGGCATGTCAAGTTTTGATGAGTCTTCAAAAGAAATTCCTAAAGAGGCTTCAGATGAAGAGGTACAAATAACTGTAGCAGAAGGTAGTGCCGATTCTGAGCAGGAAAGCAACTCTGGACCTGACTCAGAACATACTATTTTAAAACAAATACCAGATGAAAAGCCACAAATTTATGAGGAAATCTCGTCAGAAGCACATGCTGAAGGAGAAGATGGATGGCAACCAGTTCAAAGACCAAGATCAACTGGCTCATATGGCCGGAGACTGAAGCAGAGAAGGGCGACACTTGGCAAAGTTTATAGTTATCAAAAGAATGTGGAAGTTGGCACAGAATCTCCTTCTGTAAGGAATGCCAGTCCGAATAGTAGGTATTATTTCATGAAGAAGAGGTCAATTTCCCATGGAGGTTATACGGATGATCATACAGTAAACATCACCCAAGGCCCTAAATTTGGAAGGAAAGTAGTTAAAGCTGTTACATACAGGGTCAAATCCATACCCTCAACATCCAAGGCTAGTGCAAATGAGACGTTAGAAACAGGTGACAAGCTGTTTACTTCTCTTTCAGAACCTGATCCAATTGATGCTAATCCAGTTAAGAATTCTATAGTTAGTCTTGGAAAGTCTCCTTCATACAAGGAAGTGGCGTTAGCTCCTCCAGGGACAATCTCCAAGTTCCAGGTCTATAATCCTCCAAGTGAGATTTCTGTTAGCAGTGAACATGATAGTGGAAAAGCTGAAGAGGAAGATATTGAAGCTAATAGGGATGCTAATCCAACCCCGGCTGAGGCAAATGATATGAATAAAGAGAAGAATAATAATTCTGTTTCAGATTCTGTTGATGATTCACAGGATGATATTGGAGTTACTACTGAGAAGAAAGAGGAAACACAGTTACTTGTTGCTGTGCAAGATGATTGTATGAGTGCTGAGGGGAAATTAGGAGATGTTGAAGCTCAAGGAGCAATCGATGATAGCGTATTGATTCAGGCGGTTGATGATCACGTGGATTCTTCCAAAAAAGAACTCAATGCAAGTAATTCATCTGGCAGTTTGGAAGCTAGTGATAGTACAAATCCCATTTCCCAAGGTGGCGAGGATTTAAGGGTCAATGTATCATCATCAAATCAGAGTCACACTGGGGCCATCCCGTATAAGAAACTGTCTGCATCTGCAGCTCCATTCAACCCATCTCCTGCCATTGCACGTGCTCCACCAATTGCCATGAATATGACTCTTCCTTCTGGTCCTAGTGCGGTTCCTGCAATTGGCCCCTGGCCAGTAAACATGATTCAACAAACTCCTCCCATGTGCTCCTCTCCTCACCATGCATATCCATCGCCTCCAACTACACCGAACATGATGCAACCACTTCCATTTATGTATCCTCCTTATACACAACCTCAATCAGTGCCACCTTGCAATTTTCCGGTCACTAGCAGTGCCTTTCATGCGAATCATTTTACATGGCAATGTAATATGAACCCTACAGTATCTAAGTTTGGTCCCGGTGCTGTTTGGCCTGGTTGTCATCCCGTGGAATTTCCTCTTCCTTTACCTATTGTTGAACCAATCCCGGATCCCATTTCAGAGTCACAAGTTCTGTGTCATGGTTCTGAAAGTCCAAGTTCACCTTCGGTTCTTCCTGAAGACATTGATAATATTGGTGATTCTAATCAATTGGTAAAACCTTTAACATCAGACACAAGTGAAGATGAAGCAGTGAGAACTGGTTCAGAAAGCCTACAAGAAAATGGTGATATGAATTTACATGGGAGTGAAAATTCTGGGAACAAACAAAATCAAAACATTGGTTCAAATGGCAACTCTGGTTGTAGTGAAACAAACATGGATAGCGAGAAAACCTTCAGCATTTTGATTCGGGGGAGAAGAAATCGAAAGCAGACTCTGAGAATGCCAATAAGTTTGCTTACTCGACCTAATGGTTCACAGTCATTTAAGGTTATTTATAACCGCGTAGTTAGAGGAAGTCATGCTTCCAAGTCTATCAATCTCTCGTCTAGTAAAGATTGTACTGCTACCGCTTGA 5487 0.4303 MAPRNSRAKAKGEKKKKDEKVLPVVIDITVKLLDETHVLKVRGPRLKDMVDVSALKPCLLTLVEEEYNEERSVEHVRRLLDIVACTTSFGPSPPPPPKNAAGTVTKSGKSEIPPAKDAAVTVADVDGEISHSCPKLENFYEFFSLSHLTAPIQCATLNSVLFLSHSSVINCITVACEERFEAACGGDIGGGLSVLAGCEDFVKVCNGKVVHVEACRKGFYSVGKQRILCHNLVDLLRQLSRAFDTAFDDLLKAFSERNKFGNLPYGFRANTWLVPPVAAQLPSSFPPLPVEDETWGGNGGSLAKDGKYDLVPWAKEFSLIASMPCKTAEERQVRDRKAFLLHSLFVDVSIFRAIRAVKHVMEEPNFSCSVVENNIVYTERVGDLSIKVLENGSVASSKIDTKIDGVEATGVNQKDLIERNLLKGITADENTAAHDITTLGVVNVRYCGYVVVVKVEVEVRENVDSPSQQTIELFDQPEGGANALNINSLRLLLHNTTPPENNKPMIQIQTFESEEIGASHSFVERLIKESLAKLEEEEPGMDYFVRWELGACWMQHLQDQNNNTEKDKKPSLEKAKNEMKVEGLGKPLKALKNYKKKSDSSNTTSASEYPKFSRESKSPPLPSIESQHETTEAENELVLKSMLSEEAFTRFKESGTGLHCKSMHDLIDLSQKYYKDVALPKLVADFGSLELSPVDGRTLTDFMHTRGLRMRSLGHVVKLSEKLSHVQSLCIHEMIVRAFKHILRAVISSVNKEKMASSIAGALNFLLGVPGSRDSDKSHEVHPLVWKWLEVFLKKRFDWDLHRLNYKDVRKFAILRGLCHKVGIELVPRDFDMDSSIPFHKSDIVSLVPVHKQAACSSADGRQLLESSKTALDKGKLEDAVTYGTKALAKLVAVCGPYHRMTAGAYSLLAVVLYHTGDFNQATIYQQKALDINERELGLDHPDTMKSYGDLAVFYYRLQHTELALKYVKRALYLLHLTCGPSHPNTAATYINVAMMEEGLGNVHVALRYLHKALKCNQRLLGADHIQTAASYHAIAIALSLMEAYPLSVQHEQTTLQILRSKLGPDDLRTQDAAAWLEYFESKAFEQQEAARNGTRKPDASIASKGHLRYNLLDYINPDHDAKGRDAATKRRSQITKVRATSYLNLGMSSFDESSKEIPKEASDEEVQITVAEGSADSEQESNSGPDSEHTILKQIPDEKPQIYEEISSEAHAEGEDGWQPVQRPRSTGSYGRRLKQRRATLGKVYSYQKNVEVGTESPSVRNASPNSRYYFMKKRSISHGGYTDDHTVNITQGPKFGRKVVKAVTYRVKSIPSTSKASANETLETGDKLFTSLSEPDPIDANPVKNSIVSLGKSPSYKEVALAPPGTISKFQVYNPPSEISVSSEHDSGKAEEEDIEANRDANPTPAEANDMNKEKNNNSVSDSVDDSQDDIGVTTEKKEETQLLVAVQDDCMSAEGKLGDVEAQGAIDDSVLIQAVDDHVDSSKKELNASNSSGSLEASDSTNPISQGGEDLRVNVSSSNQSHTGAIPYKKLSASAAPFNPSPAIARAPPIAMNMTLPSGPSAVPAIGPWPVNMIQQTPPMCSSPHHAYPSPPTTPNMMQPLPFMYPPYTQPQSVPPCNFPVTSSAFHANHFTWQCNMNPTVSKFGPGAVWPGCHPVEFPLPLPIVEPIPDPISESQVLCHGSESPSSPSVLPEDIDNIGDSNQLVKPLTSDTSEDEAVRTGSESLQENGDMNLHGSENSGNKQNQNIGSNGNSGCSETNMDSEKTFSILIRGRRNRKQTLRMPISLLTRPNGSQSFKVIYNRVVRGSHASKSINLSSSKDCTATA 1828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00098 1828 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 858 1108 - -
Vimu9g00098 1828 Gene3D Tetratricopeptide repeat domain 862 975 IPR011990 GO:0005515
Vimu9g00098 1828 Gene3D Tetratricopeptide repeat domain 976 1101 IPR011990 GO:0005515
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 90 112 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 597 612 - -
Vimu9g00098 1828 SUPERFAMILY Hypothetical protein c14orf129, hspc210 202 259 IPR023231 -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1411 1430 - -
Vimu9g00098 1828 CDD CLU-central 693 833 IPR033646 -
Vimu9g00098 1828 ProSiteProfiles Clueless (Clu) domain profile. 291 568 IPR025697 -
Vimu9g00098 1828 ProSiteProfiles TPR repeat profile. 903 936 IPR019734 GO:0005515
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1680 1694 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 560 634 - -
Vimu9g00098 1828 Pfam Tetratricopeptide repeat 902 972 - -
Vimu9g00098 1828 Pfam Tetratricopeptide repeat 986 1061 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1485 1524 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 561 585 - -
Vimu9g00098 1828 Pfam Translation initiation factor eIF3 subunit 135 691 832 IPR033646 -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1725 1763 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1379 1442 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1210 1235 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1386 1402 - -
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1677 1763 - -
Vimu9g00098 1828 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT EIF-3 37 1437 IPR027523 GO:0006996
Vimu9g00098 1828 MobiDBLite consensus disorder prediction 1488 1524 - -
Vimu9g00098 1828 SMART tpr_5 903 936 IPR019734 GO:0005515
Vimu9g00098 1828 SMART tpr_5 987 1020 IPR019734 GO:0005515
Vimu9g00098 1828 SMART tpr_5 945 978 IPR019734 GO:0005515
Vimu9g00098 1828 SUPERFAMILY TPR-like 940 1067 IPR011990 GO:0005515
Vimu9g00098 1828 SUPERFAMILY TPR-like 869 974 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00098 Vimu-Chr9 1156701 1173895 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00098 K03255 - gmx:100808136 2938.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00098 9 1156701 1173895 Vimu9g00098 9 1156701 1173895 ECH
Vimu2g01547 2 10767366 10783062 Vimu9g00098 9 1156701 1173895 PCT